Publications

65 entries « 1 of 2 »

2021

Casares, Fernando; Maeso, Ignacio; González, Josefa; Gómez-Mestre, Ivan; Nieto, Angela; Poyatos, Juan F

The Genesis of the Phenotype Book Chapter Forthcoming

Bovolenta, Paola; Manzanares, Miguel; Buceta, Javier (Ed.): Editorial CSIC, Forthcoming.

BibTeX

Martin Kapun Joaquin Nunez, Maria Bogaerts-Marquez Jesus Murga-Moreno Margot Paris Joseph Outten Marta Coronado-Zamora Courtney Tern Omar Rota-Stabelli Maria Garcia Guerreiro Sonia Casillas Dorcas Orengo Eva Puerma Maaria Kankare Lino Ometto Volker Loeschcke Banu Onder Jessica Abbott Stephen Schaeffer Subhash Rajpurohit Emily Behrman Mads Schou Thomas Merritt Brian Lazzaro Amanda Glaser-Schmitt Eliza Argyridou Fabian Staubach Yun Wang Eran Tauber Svitlana Serga Daniel Fabian Kelly Dyer Christopher Wheat John Parsch Sonja Grath Marija Savic Veselinovic Marina Stamenkovic-Radak Mihailo Jelic Antonio Buendia-Ruiz Josefa Gomez-Julian Luisa Espinosa-Jimenez Francisco Gallardo-Jimenez Aleksandra Patenkovic Katarina Eric Marija Tanaskovic Anna Ullastres Lain Guio Miriam Merenciano Sara Guirao-Rico Vivien Horvath Darren Obbard Elena Pasyukova Vladimir Alatortsev Cristina Vieira Jorge Vieira Roberto Torres Iryna Kozeretska Oleksandr Maistrenko Catherine Montchamp-Moreau Dmitry Mukha Heather Machado Antonio Barbadilla Dmitri Petrov Paul Schmidt Josefa Gonzalez Thomas Flatt Alan Bergland

Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource Online

2021.

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Guirao-Rico, Sara; González, Josefa

Benchmarking the performance of Pool-seq SNP callers using simulated and real sequencing data Journal Article

Molecular Ecology Resources, 2021.

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Vargas-Chávez, Carlos; González, Josefa

Transposable Elements in Anopheles Species: Refining Annotation Strategies Towards Population Genomics Analyses Book Chapter

Population Genomics, Springer International Publishing, 2021.

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Bogaerts-Márquez, María; Guirao-Rico, Sara; Gautier, Mathieu; González, Josefa

Temperature, rainfall and wind variables underlie environmental adaptation in natural populations of Drosophila melanogaster Journal Article

Molecular Ecology, 30 (4), pp. 938–954, 2021.

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2020

Vargas-Chavez, Carlos; Pendy, Neil Michel Longo; Nsango, Sandrine; Aguilera, Laura; Ayala, Diego; Gonzalez, Josefa

Impact of transposable elements on the genome of the urban malaria vector Anopheles coluzzii Online

2020.

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Ruiz-Arenas C., ; Cáceres A., ; López M., ; Pelegrí-Sisó D., ; González J., ; González, J R

Identifying chromosomal subpopulations based on their recombination histories advances the study of the genetic basis of phenotypic traits Journal Article

Genome Research, 2020.

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Wallace, Megan A; Coffman, Kelsey A; Gilbert, Clement; Ravindran, Sanjana; Albery, Gregory F; Abbott, Jessica; Argyridou, Eliza; Bellosta, Paola; Betancourt, Andrea J; Colinet, Herve; Eric, Katarina; Glaser-Schmitt, Amanda; Grath, Sonja; Jelic, Mihailo; Kankare, Maaria; Kozeretska, Iryna; Loeschcke, Volker; Montchamp-Moreau, Catherine; Ometto, Lino; Onder, Banu Sebnem; Orengo, Dorcas J; Parsch, John; Pascual, Marta; Patenkovic, Aleksandra; Puerma, Eva; Ritchie, Michael G; Rota-Stabelli, Omar; Schou, Mads Fristrup; Serga, Svitlana V; Stamenkovic-Radak, Marina; Tanaskovic, Marija; Veselinovic, Marija Savic; Vieira, Jorge; Vieira, Cristina P; Kapun, Martin; Flatt, Thomas; Gonzalez, Josefa; Staubach, Fabian; Obbard, Darren J

The discovery, distribution and diversity of DNA viruses associated with Drosophila melanogaster in Europe Online

2020.

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González, Juan; Ruiz-Arenas, Carlos; Cáceres, Alejandro; Morán, Ignasi; López-Sánchez, Marcos; Alonso, Lorena; Tolosana, Ignacio; Guindo-Martínez, Marta; Mercader, Josep M; Esko, Tonu; Torrents, David; González, Josefa; Pérez-Jurado, Luis A

Polymorphic Inversions Underlie the Shared Genetic Susceptibility of Obesity-Related Diseases Journal Article

The American Journal of Human Genetics, 2020.

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Almudi, Isabel; Vizueta, Joel; Wyatt, Christopher D R; de Mendoza, Alex; Marlétaz, Ferdinand; Firbas, Panos N; Feuda, Roberto; Masiero, Giulio; Medina, Patricia; Alcaina-Caro, Ana; Cruz, Fernando; Gómez-Garrido, Jessica; Gut, Marta; Alioto, Tyler S; Vargas-Chavez, Carlos; Davie, Kristofer; Misof, Bernhard; González, Josefa; Aerts, Stein; Lister, Ryan; Paps, Jordi; Rozas, Julio; Sánchez-Gracia, Alejandro; Irimia, Manuel; Maeso, Ignacio; Casares, Fernando

Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings Journal Article

Nature Communications, 11 (1), 2020.

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Kapun, Martin; Barron, Maite; Staubach, Fabian; Vieira, Jorge; Obbard, Darren; Wiberg, Axel R W; Goubert, Clement; Stabelli, Omar Rota; Kankare, Maaria; Haudry, Annabelle; Bogaerts-Marquez, Maria; Waidele, Lena; Kozeretska, Iryna; Pasyukova, Elena; Loeschcke, Volker; Pascual, Marta; Vieira, Cristina P; Serga, Svitlana; Montchamp-Moreau, Catherine; Abbott, Jessica; Gibert, Patricia; Porcelli, Damiano; Posnien, Nico; Sanchez-Gracia, Alejandro; Grath, Sonja; Sucena, Elio; Bergland, Alan; Guerreiro, Maria Pilar Garcia; Onder, Banu Sebnem; Argyridou, Eliza; Guio, Lain; Schou, Mads Fristrup; Deplancke, Bart; Vieira, Cristina; Ritchie, Michael G; Zwaan, Bas; Tauber, Eran; Orengo, Dorcas; Puerma, Eva; Aguade, Montserrat; Schmidt, Paul; Parsch, John; Betancourt, Andrea; Flatt, Thomas; Gonzalez, Josefa

Genomic analysis of European Drosophila populations reveals major longitudinal structure, continent-wide selection, and unknown DNA viruses Journal Article

Molecular Biology and Evolution, 37 (9), pp. 2661-2678, 2020.

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Bogaerts-Marquez, María; Barrón, Maite; Fiston-Lavier, Anna-Sophie; Vendrell-Mir, Pol; Castanera, Raúl; Casacuberta, Josep M; González, Josefa

T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data Journal Article

Bioinformatics, 2020.

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Salces-Ortiz, Judit; Vargas-Chavez, Carlos; Guio, Lain; Rech, Gabriel E; Gonzalez, Josefa

Transposable elements contribute to the genomic response to insecticides in Drosophila melanogaster Journal Article

Philosophical Transactions of the Royal Society B: Biological Sciences, 375 (1795), pp. 20190341, 2020.

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Rota-Stabelli, Omar; Ometto, Lino; Tait, Gabriella; Ghirotto, Silvia; Kaur, Rupinder; Drago, Francesco; González, Josefa; Walton, Vaughn M; Anfora, Gianfranco; Rossi-Stacconi, Marco Valerio

Distinct genotypes and phenotypes in European and American strains of Drosophila suzukii: implications for biology and management of an invasive organism Journal Article

Journal of Pest Science, 93 (1), pp. 77–89, 2020.

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2019

Vendrell-Mir, Pol; Barteri, Fabio; Merenciano, Miriam; González, Josefa; Casacuberta, Josep M; Castanera, Raúl

A benchmark of transposon insertion detection tools using real data Journal Article

Mobile DNA, 10 (1), 2019.

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Barrón, Maite; Paupy, Christophe; Rahola, Nil; Akone-Ella, Ousman; Ngangue, Marc F; Wilson-Bahun, Theodel A; Pombi, Marco; Kengne, Pierre; Costantini, Carlo; Simard, Frédéric; González, Josefa; Ayala, Diego

A new species in the major malaria vector complex sheds light on reticulated species evolution Journal Article

Scientific Reports, 9 (1), 2019.

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Machado, Heather; Bergland, Alan O; Taylor, Ryan; Tilk, Susanne; Behrman, Emily; Dyer, Kelly; Fabian, Daniel; Flatt, Thomas; Gonzalez, Josefa; Karasov, Talia; Kozeretska, Iryna; Lazzaro, Brian P; Merritt, Thomas; Pool, John; textquotesingle, Katherine O; Rajpurohit, Subhash; Roy, Paula; Schaeffer, Stephen; Serga, Svitlana; Schmidt, Paul; Petrov, Dmitri

Broad geographic sampling reveals predictable and pervasive seasonal adaptation in Drosophila Online

2019.

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Guio, Lain; González, Josefa

New Insights on the Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans Book Chapter

Methods in Molecular Biology, pp. 505–530, Springer New York, 2019.

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Villanueva-Cañas J.L., Horvath Aguilera;L. V; González, J

Diverse families of transposable elements affect the transcriptional regulation of stress-response genes in Drosophila melanogaster Journal Article

Nucleic Acids Research, 2019.

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Anna Ullastres, Miriam Merenciano ; Gonzalez, Josefa

Natural transposable element insertions drive expression changes in genes underlying Drosophila immune response Online

2019.

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Merenciano, Miriam; Iacometti, Camillo; González, Josefa

A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster Journal Article

Mobile DNA, 10 (1), 2019.

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Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila.

Rech, Gabriel E; Bogaerts-Marquez, Maria; Barron, Maite G; Merenciano, Miriam; Villanueva-Canas, Jose L; Horvath, Vivien; Fiston-Lavier, Anna-Sophie; Luyten, Isabelle; Venkataram, Sandeep; Quesneville, Hadi; Petrov, Dmitri A; Gonzalez, Josefa

Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. Journal Article

PLoS Genetics, 15 (2), pp. e1007900, 2019.

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Guirao-Rico, Sara; González, Josefa

Evolutionary insights from large scale resequencing datasets in Drosophila melanogaster Journal Article

Current Opinion in Insect Science, 31 , pp. 70-76, 2019.

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Emmanuelle Lerat Clément Goubert, Sara Guirao-Rico Miriam Merenciano Anne-Béatrice Dufour Cristina Vieira ; González., Josefa

Population specific dynamics and selection patterns of transposable element insertions in European natural populations Journal Article

Molecular Ecology, 2019.

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2018

Mateo, L; Rech, G; Gonzalez, J

Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations Journal Article

Scientific Reports, 8 , pp. 16143, 2018.

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Guio, Lain; Vieira, Cristina; González, Josefa

Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster Journal Article

Scientific Reports, 8 , pp. 12197, 2018.

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Li, Zi-Wen; Hou, Xing-Hui; Chen, Jia-Fu; Xu, Yong-Chao; Qiong Wu Josefa González, ; Guo, Ya-Long

Transposable elements contribute to the adaptation of Arabidopsis thaliana Journal Article

Genome Biology and Evolution, 2018.

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2017

Horvath, V; Merenciano, M; Gonzalez, J

Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response Journal Article

Trends Genet, 33 (11), pp. 832-841, 2017.

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Beyond SNPs: how to detect selection on transposable element insertions

Villanueva-Cañas, J L; Rech, G E; de Cara, M A R; González, J

Beyond SNPs: how to detect selection on transposable element insertions Journal Article

Methods in Ecology and Evolution, 8 (6), pp. 728-737, 2017.

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Manh, Le H; Guio, L; Merenciano, M; Rovira, Q; Barron, M G; Gonzalez, J

Natural and laboratory mutations in kuzbanian are associated with zinc stress phenotypes in Drosophila melanogaster Journal Article

Sci Rep, 7 , pp. 42663, 2017.

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2016

Bergland, A O; Tobler, R; Gonzalez, J; Schmidt, P; Petrov, D A

Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster Journal Article

Mol Ecol., 25 (5), pp. 34, 2016.

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Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila

Merenciano, M; Ullastres, A; de Cara, M A R; Barron, M G; Gonzalez, J

Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila Journal Article

PLoS Genet, 12 (8), pp. e1006249, 2016.

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Ullastres, A; Merenciano, M; Guio, L; González, J

Transposable elements: a toolkit for stress and environmental adaptation in bacteria Book Chapter

de Bruijn, Frans J (Ed.): Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria, Chapter 20.10, JohnWiley & Sons, Inc., First edition, 2016.

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2015

Gonzalez, J; Martinez, J; Makalowski, W

Lack of population differentiation patterns of previously identified putatively adaptive transposable element insertions at microgeographic scales Journal Article

Biol Direct, 10 , pp. 50, 2015.

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Fiston-Lavier, A S; Barron, M G; Petrov, D A; Gonzalez, J

T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data Journal Article

Nucleic Acids Res, 43 (4), pp. e22, 2015.

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Guio, L; Gonzalez, J

The dominance effect of the adaptive transposable element insertion Bari-Jheh depends on the genetic background Journal Article

Genome Biol Evol, 7 (5), pp. 1260-6, 2015.

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Exploring the phenotypic space and the evolutionary history of a natural mutation in Drosophila melanogaster

Ullastres, A; Petit, N; González, J

Exploring the phenotypic space and the evolutionary history of a natural mutation in Drosophila melanogaster Journal Article

Molecular Biology and Evolution, 32 (7), 2015.

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2014

Adaptation through chromosomal inversions in Anopheles

Ayala, D; Ullastres, A; Gonzalez, J

Adaptation through chromosomal inversions in Anopheles Journal Article

Front Genet, 5 , pp. 129, 2014.

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Barron, M G; Fiston-Lavier, A S; Petrov, D A; Gonzalez, J

Population genomics of transposable elements in Drosophila Journal Article

Annu Rev Genet, 48 , pp. 561-81, 2014.

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Guio, L; Barron, M G; Gonzalez, J

The transposable element Bari-Jheh mediates oxidative stress response in Drosophila Journal Article

Mol Ecol, 23 (8), pp. 2020-30, 2014.

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Pogo-like transposases have been repeatedly domesticated into CENP-B-related proteins

Mateo, L; Gonzalez, J

Pogo-like transposases have been repeatedly domesticated into CENP-B-related proteins Journal Article

Genome Biol Evol, 6 (8), pp. 2008-16, 2014.

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A transposable element insertion confers xenobiotic resistance in Drosophila

Mateo, L; Ullastres, A; Gonzalez, J

A transposable element insertion confers xenobiotic resistance in Drosophila Journal Article

PLoS Genet, 10 (8), pp. e1004560, 2014.

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2013

Casacuberta, E; Gonzalez, J

The impact of transposable elements in environmental adaptation Journal Article

Mol Ecol, 22 (6), pp. 1503-17, 2013.

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2012

Calvete, O; Gonzalez, J; Betran, E; Ruiz, A

Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila Journal Article

Mol Biol Evol, 29 (7), pp. 1875-89, 2012.

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González, J; Petrov, D A

Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans Book Chapter

Methods in Molecular Biology, 2012.

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Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster

Zhu, Y; Bergland, A O; Gonzalez, J; Petrov, D A

Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster Journal Article

PLoS One, 7 (7), pp. e41901, 2012.

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2011

Fiston-Lavier, A S; Carrigan, M; Petrov, D A; Gonzalez, J

T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data Journal Article

Nucleic Acids Res, 39 (6), pp. e36, 2011.

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Petrov, D A; Fiston-Lavier, A S; Lipatov, M; Lenkov, K; Gonzalez, J

Population genomics of transposable elements in Drosophila melanogaster Journal Article

Mol Biol Evol, 28 (5), pp. 1633-44, 2011.

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2010

Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila

Gonzalez, J; Karasov, T L; Messer, P W; Petrov, D A

Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila Journal Article

PLoS Genet, 6 (4), pp. e1000905, 2010.

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2009

Gonzalez, J; Macpherson, J M; Messer, P W; Petrov, D A

Inferring the strength of selection in Drosophila under complex demographic models Journal Article

Mol Biol Evol, 26 (3), pp. 513-26, 2009.

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65 entries « 1 of 2 »
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