Publications

84 entries « 2 of 2 »

2016

Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila

Merenciano, M; Ullastres, A; de Cara, M A R; Barron, M G; Gonzalez, J

Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila Journal Article

In: PLoS Genet, vol. 12, no. 8, pp. e1006249, 2016.

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Ullastres, A; Merenciano, M; Guio, L; González, J

Transposable elements: a toolkit for stress and environmental adaptation in bacteria Book Chapter

In: de Bruijn, Frans J (Ed.): Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria, Chapter 20.10, JohnWiley & Sons, Inc., First edition, 2016.

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2015

Gonzalez, J; Martinez, J; Makalowski, W

Lack of population differentiation patterns of previously identified putatively adaptive transposable element insertions at microgeographic scales Journal Article

In: Biol Direct, vol. 10, pp. 50, 2015.

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Fiston-Lavier, A S; Barron, M G; Petrov, D A; Gonzalez, J

T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data Journal Article

In: Nucleic Acids Res, vol. 43, no. 4, pp. e22, 2015.

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Guio, L; Gonzalez, J

The dominance effect of the adaptive transposable element insertion Bari-Jheh depends on the genetic background Journal Article

In: Genome Biol Evol, vol. 7, no. 5, pp. 1260-6, 2015.

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Exploring the phenotypic space and the evolutionary history of a natural mutation in Drosophila melanogaster

Ullastres, A; Petit, N; González, J

Exploring the phenotypic space and the evolutionary history of a natural mutation in Drosophila melanogaster Journal Article

In: Molecular Biology and Evolution, vol. 32, no. 7, 2015.

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2014

Adaptation through chromosomal inversions in Anopheles

Ayala, D; Ullastres, A; Gonzalez, J

Adaptation through chromosomal inversions in Anopheles Journal Article

In: Front Genet, vol. 5, pp. 129, 2014.

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Barron, M G; Fiston-Lavier, A S; Petrov, D A; Gonzalez, J

Population genomics of transposable elements in Drosophila Journal Article

In: Annu Rev Genet, vol. 48, pp. 561-81, 2014.

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Guio, L; Barron, M G; Gonzalez, J

The transposable element Bari-Jheh mediates oxidative stress response in Drosophila Journal Article

In: Mol Ecol, vol. 23, no. 8, pp. 2020-30, 2014.

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Pogo-like transposases have been repeatedly domesticated into CENP-B-related proteins

Mateo, L; Gonzalez, J

Pogo-like transposases have been repeatedly domesticated into CENP-B-related proteins Journal Article

In: Genome Biol Evol, vol. 6, no. 8, pp. 2008-16, 2014.

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A transposable element insertion confers xenobiotic resistance in Drosophila

Mateo, L; Ullastres, A; Gonzalez, J

A transposable element insertion confers xenobiotic resistance in Drosophila Journal Article

In: PLoS Genet, vol. 10, no. 8, pp. e1004560, 2014.

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2013

Casacuberta, E; Gonzalez, J

The impact of transposable elements in environmental adaptation Journal Article

In: Mol Ecol, vol. 22, no. 6, pp. 1503-17, 2013.

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2012

Calvete, O; Gonzalez, J; Betran, E; Ruiz, A

Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila Journal Article

In: Mol Biol Evol, vol. 29, no. 7, pp. 1875-89, 2012.

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González, J; Petrov, D A

Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans Book Chapter

In: Methods in Molecular Biology, 2012.

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Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster

Zhu, Y; Bergland, A O; Gonzalez, J; Petrov, D A

Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster Journal Article

In: PLoS One, vol. 7, no. 7, pp. e41901, 2012.

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2011

Fiston-Lavier, A S; Carrigan, M; Petrov, D A; Gonzalez, J

T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data Journal Article

In: Nucleic Acids Res, vol. 39, no. 6, pp. e36, 2011.

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Petrov, D A; Fiston-Lavier, A S; Lipatov, M; Lenkov, K; Gonzalez, J

Population genomics of transposable elements in Drosophila melanogaster Journal Article

In: Mol Biol Evol, vol. 28, no. 5, pp. 1633-44, 2011.

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2010

Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila

Gonzalez, J; Karasov, T L; Messer, P W; Petrov, D A

Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila Journal Article

In: PLoS Genet, vol. 6, no. 4, pp. e1000905, 2010.

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2009

Gonzalez, J; Macpherson, J M; Messer, P W; Petrov, D A

Inferring the strength of selection in Drosophila under complex demographic models Journal Article

In: Mol Biol Evol, vol. 26, no. 3, pp. 513-26, 2009.

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Gonzalez, J; Macpherson, J M; Petrov, D A

A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster Journal Article

In: Mol Biol Evol, vol. 26, no. 9, pp. 1949-61, 2009.

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Barker, J S; Frydenberg, J; Gonzalez, J; Davies, H I; Ruiz, A; Sorensen, J G; Loeschcke, V

Bottlenecks, population differentiation and apparent selection at microsatellite loci in Australian Drosophila buzzatii Journal Article

In: Heredity, vol. 102, no. 4, pp. 389-401, 2009.

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Gonzalez, J; Petrov, D A

The adaptive role of transposable elements in the Drosophila genome Journal Article

In: Gene, vol. 448, no. 2, pp. 124-33, 2009.

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Gonzalez, J; Petrov, D A

MITEs—The Ultimate Parasites Journal Article

In: Science, vol. 325 (5946), pp. 1352-3, 2009.

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da Costa, O Prazeres; Gonzalez, J; Ruiz, A

Cloning and sequencing of the breakpoint regions of inversion 5g fixed in Drosophila buzzatii Journal Article

In: Chromosoma, vol. 118, no. 3, pp. 349-60, 2009.

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2008

High rate of recent transposable element-induced adaptation in Drosophila melanogaster

Gonzalez, J; Lenkov, K; Lipatov, M; Macpherson, J M; Petrov, D A

High rate of recent transposable element-induced adaptation in Drosophila melanogaster Journal Article

In: PLoS Biol, vol. 6, no. 10, pp. e251, 2008.

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Macpherson, J M; Gonzalez, J; Witten, D M; Davis, J C; Rosenberg, N A; Hirsh, A E; Petrov, D A

Nonadaptive explanations for signatures of partial selective sweeps in Drosophila Journal Article

In: Mol Biol Evol, vol. 25, no. 6, pp. 1025-42, 2008.

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2007

Gonzalez, J; Casals, F; Ruiz, A

Testing chromosomal phylogenies and inversion breakpoint reuse in Drosophila Journal Article

In: Genetics, vol. 175, no. 1, pp. 167-77, 2007.

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2006

Casals, F; Gonzalez, J; Ruiz, A

Abundance and chromosomal distribution of six Drosophila buzzatii transposons: BuT1, BuT2, BuT3, BuT4, BuT5, and BuT6 Journal Article

In: Chromosoma, vol. 115, no. 5, pp. 403-12, 2006.

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2005

Gonzalez, J; Nefedov, M; Bosdet, I; Casals, F; Calvete, O; Delprat, A; Shin, H; Chiu, R; Mathewson, C; Wye, N; Hoskins, R A; Schein, J E; de Jong, P; Ruiz, A

A BAC-based physical map of the Drosophila buzzatii genome Journal Article

In: Genome Res, vol. 15, no. 6, pp. 885-92, 2005.

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Casals, F; Caceres, M; Manfrin, M H; Gonzalez, J; Ruiz, A

Molecular characterization and chromosomal distribution of Galileo, Kepler and Newton, three foldback transposable elements of the Drosophila buzzatii species complex Journal Article

In: Genetics, vol. 169, no. 4, pp. 2047-59, 2005.

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2004

Gonzalez, J; Casals, F; Ruiz, A

Duplicative and conservative transpositions of larval serum protein 1 genes in the genus Drosophila Journal Article

In: Genetics, vol. 168, no. 1, pp. 253-64, 2004.

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2003

Ranz, J M; Gonzalez, J; Casals, F; Ruiz, A

Low occurrence of gene transposition events during the evolution of the genus Drosophila Journal Article

In: Evolution, vol. 57, no. 6, pp. 1325-1335, 2003.

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2002

González, J; Ranz, J M; Ruiz, A

Chromosomal Elements Evolve at Different Rates in the Drosophila Genome Journal Article

In: Genetics Society of America, vol. 161, no. 3, 2002.

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2000

Gonzalez, J; Bertran, E; Ashburner, M; Ruiz, A

Molecular organization of the Drosophila melanogaster Adh chromosomal region in D. repleta and D. buzzatii, two distantly related species of the Drosophila subgenus Journal Article

In: Chromosome Research, vol. 8, no. 5, pp. 375-385, 2000.

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84 entries « 2 of 2 »
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