2024
|
| Hoedjes, Katja; Grath, Sonja; Posnien, Nico; Ritchie, Mike; Schlötterer, Christian; Abbott, Jessica; Almudi, Isabel; Coronado-Zamora, Marta; Mitchell, Esra Durmaz; Flatt, Thomas; Fricke, Claudia; Glaser-Schmitt, Amanda; Gonzalez, Josefa; Holman, Luke; Kankare, Maaria; Lenhart, Adam; Orengo, Dorcas; Snook, Rhonda; Yilmaz, Vera; Yusuf, Leeban From whole bodies to single cells: a guide to transcriptomic approaches for ecology and evolutionary biology Journal Article In: Molecular Ecology, no. e17382, 2024. @article{nokey,
title = {From whole bodies to single cells: a guide to transcriptomic approaches for ecology and evolutionary biology},
author = {Katja Hoedjes and Sonja Grath and Nico Posnien and Mike Ritchie and Christian Schlötterer and Jessica Abbott and Isabel Almudi and Marta Coronado-Zamora and Esra Durmaz Mitchell and Thomas Flatt and Claudia Fricke and Amanda Glaser-Schmitt and Josefa Gonzalez and Luke Holman and Maaria Kankare and Adam Lenhart and Dorcas Orengo and Rhonda Snook and Vera Yilmaz and Leeban Yusuf},
doi = {https://doi.org/10.1111/mec.17382},
year = {2024},
date = {2024-06-10},
urldate = {2024-04-29},
journal = {Molecular Ecology},
number = {e17382},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Baduel, Pierre; Coronado-Zamora, Marta; Crespel, Amélie; Rodríguez, Bárbara Díez; Fox, Janay; Galanti, Dario; González, Josefa; Jueterbock, Alexander; Sammarco, Iris; Wootton, Eric; Harney, Ewan The evolutionary consequences of interactions between the epigenome, the genome, and the environment Journal Article Forthcoming In: Forthcoming. @article{nokey,
title = {The evolutionary consequences of interactions between the epigenome, the genome, and the environment},
author = {Pierre Baduel and Marta Coronado-Zamora and Amélie Crespel and Bárbara Díez Rodríguez and Janay Fox and Dario Galanti and Josefa González and Alexander Jueterbock and Iris Sammarco and Eric Wootton and Ewan Harney
},
year = {2024},
date = {2024-05-31},
keywords = {},
pubstate = {forthcoming},
tppubtype = {article}
}
|
| Sabarís, Gonzalo; Schuettengruber, Bernd; Papadopoulos, Giorgio L.; Coronado-Zamora, Marta; Fitz-James, Maximilian H.; González, Josefa; Cavalli, Giacomo The mechanistic basis of genetic assimilation in natural fly populations Online 2024, visited: 09.05.2024. @online{nokey,
title = {The mechanistic basis of genetic assimilation in natural fly populations},
author = {Gonzalo Sabarís and Bernd Schuettengruber and Giorgio L. Papadopoulos and Marta Coronado-Zamora and Maximilian H. Fitz-James and Josefa González and Giacomo Cavalli},
doi = {https://doi.org/10.21203/rs.3.rs-4258726/v1},
year = {2024},
date = {2024-05-09},
urldate = {2024-05-09},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| Tahami, Mohadeseh S.; Vargas-Chavez, Carlos; Poikela, Noora; Coronado-Zamora, Marta; González, Josefa; Kankare, Maaria Transposable elements in a cold-tolerant fly species, Drosophila montana: a link to adaptation to the harsh cold environments Online 2024. @online{nokey,
title = {Transposable elements in a cold-tolerant fly species, Drosophila montana: a link to adaptation to the harsh cold environments},
author = {Mohadeseh S. Tahami and Carlos Vargas-Chavez and Noora Poikela and Marta Coronado-Zamora and Josefa González and Maaria Kankare},
doi = {10.1101/2024.04.17.589934},
year = {2024},
date = {2024-04-22},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| Johnson, Marc T J; Arif, Irtaqa; Marchetti, Francesco; Munshi-South, Jason; Ness, Rob W; Szulkin, Marta; Verrelli, Brian C; Yauk, Carole L; Anstett, Daniel N; Booth, Warren; Caizergues, Aude E; Carlen, Elizabeth J; Dant, Anthony; González, Josefa; Lagos, César González; Oman, Madeleine; Phifer-Rixey, Megan; Rennison, Diana J; Rosenberg, Michael S; Winchell, Kristin M Effects of urban-induced mutations on ecology, evolution and health Journal Article In: Nat. Ecol. Evol., vol. 8, pp. 1074–1086, 2024. @article{Johnson2024-ut,
title = {Effects of urban-induced mutations on ecology, evolution and health},
author = {Marc T J Johnson and Irtaqa Arif and Francesco Marchetti and Jason Munshi-South and Rob W Ness and Marta Szulkin and Brian C Verrelli and Carole L Yauk and Daniel N Anstett and Warren Booth and Aude E Caizergues and Elizabeth J Carlen and Anthony Dant and Josefa González and César González Lagos and Madeleine Oman and Megan Phifer-Rixey and Diana J Rennison and Michael S Rosenberg and Kristin M Winchell},
year = {2024},
date = {2024-04-19},
urldate = {2024-04-19},
journal = {Nat. Ecol. Evol.},
volume = {8},
pages = {1074–1086},
publisher = {Nature Publishing Group},
abstract = {Increasing evidence suggests that urbanization is associated
with higher mutation rates, which can affect the health and
evolution of organisms that inhabit cities. Elevated pollution
levels in urban areas can induce DNA damage, leading to de novo
mutations. Studies on mutations induced by urban pollution are
most prevalent in humans and microorganisms, whereas studies of
non-human eukaryotes are rare, even though increased mutation
rates have the potential to affect organisms and their
populations in contemporary time. Our Perspective explores how
higher mutation rates in urban environments could impact the
fitness, ecology and evolution of populations. Most mutations
will be neutral or deleterious, and higher mutation rates
associated with elevated pollution in urban populations can
increase the risk of cancer in humans and potentially other
species. We highlight the potential for urban-driven increased
deleterious mutational loads in some organisms, which could lead
to a decline in population growth of a wide diversity of
organisms. Although beneficial mutations are expected to be
rare, we argue that higher mutation rates in urban areas could
influence adaptive evolution, especially in organisms with short
generation times. Finally, we explore avenues for future
research to better understand the effects of urban-induced
mutations on the fitness, ecology and evolution of city-dwelling
organisms. Pollution in urban areas causes higher rates of
mutation than in unpolluted areas. This Perspective discusses
the effects of these mutations on the health, evolutionary
fitness and ecology of urban organisms.},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Increasing evidence suggests that urbanization is associated
with higher mutation rates, which can affect the health and
evolution of organisms that inhabit cities. Elevated pollution
levels in urban areas can induce DNA damage, leading to de novo
mutations. Studies on mutations induced by urban pollution are
most prevalent in humans and microorganisms, whereas studies of
non-human eukaryotes are rare, even though increased mutation
rates have the potential to affect organisms and their
populations in contemporary time. Our Perspective explores how
higher mutation rates in urban environments could impact the
fitness, ecology and evolution of populations. Most mutations
will be neutral or deleterious, and higher mutation rates
associated with elevated pollution in urban populations can
increase the risk of cancer in humans and potentially other
species. We highlight the potential for urban-driven increased
deleterious mutational loads in some organisms, which could lead
to a decline in population growth of a wide diversity of
organisms. Although beneficial mutations are expected to be
rare, we argue that higher mutation rates in urban areas could
influence adaptive evolution, especially in organisms with short
generation times. Finally, we explore avenues for future
research to better understand the effects of urban-induced
mutations on the fitness, ecology and evolution of city-dwelling
organisms. Pollution in urban areas causes higher rates of
mutation than in unpolluted areas. This Perspective discusses
the effects of these mutations on the health, evolutionary
fitness and ecology of urban organisms. |
| Guirao-Rico, Sara; González, Josefa Transposable elements identify previously overlooked regions undergoing parallel evolution in response to diverse selective pressures Online 2024, visited: 06.04.2024. @online{nokey,
title = {Transposable elements identify previously overlooked regions undergoing parallel evolution in response to diverse selective pressures},
author = { Sara Guirao-Rico and Josefa González },
doi = {10.1101/2024.04.06.588382},
year = {2024},
date = {2024-04-06},
urldate = {2024-04-06},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
2023
|
| Coronado-Zamora, Marta; González, Josefa The epigenetics effects of transposable elements are context dependent and not restricted to gene silencing Online 2023, visited: 28.11.2023. @online{nokey,
title = {The epigenetics effects of transposable elements are context dependent and not restricted to gene silencing},
author = {Marta Coronado-Zamora and Josefa González},
doi = {https://doi.org/10.1101/2023.11.27.568862},
year = {2023},
date = {2023-11-28},
urldate = {2023-11-28},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| Orozco-Arias, Simon; Sierra, Pío; Durbin, Richard; González, Josefa MCHelper automatically curates transposable element libraries across species Online 2023, visited: 20.10.2023. @online{nokey,
title = {MCHelper automatically curates transposable element libraries across species},
author = {Simon Orozco-Arias and Pío Sierra and Richard Durbin and Josefa González},
url = {https://www.biorxiv.org/content/10.1101/2023.10.17.562682v1},
year = {2023},
date = {2023-10-20},
urldate = {2023-10-20},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| ERGA, The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics Online 2023, visited: 29.09.2023. @online{nokey,
title = {The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics},
author = {ERGA},
doi = {https://doi.org/10.1101/2023.09.25.559365},
year = {2023},
date = {2023-09-29},
urldate = {2023-09-29},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| Merenciano, Miriam; Aguilera, Laura; González, Josefa Two-step CRISPR-Cas9 protocol for transposable element deletion in D. melanogaster natural populations Journal Article In: Star Protocols , 2023. @article{nokey,
title = {Two-step CRISPR-Cas9 protocol for transposable element deletion in D. melanogaster natural populations },
author = {Miriam Merenciano and Laura Aguilera and Josefa González},
url = {https://www.sciencedirect.com/science/article/pii/S2666166723004689?via%3Dihub},
year = {2023},
date = {2023-09-15},
urldate = {2023-06-14},
journal = {Star Protocols },
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Coronado-Zamora, Marta; González, Josefa Transposons contribute to the functional diversification of the head, gut, and ovary transcriptomes across Drosophila natural strains Journal Article In: Genome Research, vol. 33, no. 9, pp. 1541–1553, 2023. @article{CoronadoZamora2023,
title = {Transposons contribute to the functional diversification of the head, gut, and ovary transcriptomes across Drosophila natural strains},
author = {Marta Coronado-Zamora and Josefa González},
url = {https://doi.org/10.1101/gr.277565.122},
doi = {10.1101/gr.277565.122},
year = {2023},
date = {2023-09-01},
urldate = {2023-09-01},
journal = {Genome Research},
volume = {33},
number = {9},
pages = {1541--1553},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Coronado-Zamora, Marta; Salces-Ortiz, Judit; Gonzalez, Josefa DrosOmics: the comparative genomics browser to explore omics data in natural strains of D. melanogaster Journal Article In: Molecular Biology and Evolution, 2023. @article{CoronadoZamora2022,
title = {DrosOmics: the comparative genomics browser to explore omics data in natural strains of D. melanogaster},
author = {Marta Coronado-Zamora and Judit Salces-Ortiz and Josefa Gonzalez},
doi = {https://doi.org/10.1093/molbev/msad075},
year = {2023},
date = {2023-03-28},
urldate = {2023-03-24},
journal = {Molecular Biology and Evolution},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Merenciano, Miriam; Gonzalez, Josefa The interplay between developmental stage and environment determines the adaptive effect of a natural transposable element insertion Journal Article In: Molecular Biology and Evolution, 2023. @article{Merenciano2022,
title = {The interplay between developmental stage and environment determines the adaptive effect of a natural transposable element insertion},
author = {Miriam Merenciano and Josefa Gonzalez},
url = {https://doi.org/10.1093/molbev/msad044},
doi = {https://doi.org/10.1093/molbev/msad044},
year = {2023},
date = {2023-02-22},
urldate = {2023-02-10},
journal = {Molecular Biology and Evolution},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Horvath, Vivien; Guirao-Rico, Sara; Salces-Ortiz, Judit; Rech, Gabriel E; Green, Llewellyn; Aprea, Eugenio; Rodeghiero, Mirco; Anfora, Gianfranco; Gonzalez, Josefa Basal and stress-induced expression changes consistent with water loss reduction explain desiccation tolerance of natural Drosophila melanogaster populations Journal Article In: BMC Biology, vol. 31, pp. 35, 2023. @article{des,
title = {Basal and stress-induced expression changes consistent with water loss reduction explain desiccation tolerance of natural Drosophila melanogaster populations},
author = {Vivien Horvath and Sara Guirao-Rico and Judit Salces-Ortiz and Gabriel E Rech and Llewellyn Green and Eugenio Aprea and Mirco Rodeghiero and Gianfranco Anfora and Josefa Gonzalez},
doi = {https://doi.org/10.1186/s12915-023-01530-4},
year = {2023},
date = {2023-02-16},
urldate = {2023-02-16},
journal = {BMC Biology},
volume = {31},
pages = {35},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Merenciano, Miriam; Coronado-Zamora, Marta; González, Josefa Experimental Validation of Transposable Element Insertions Using the Polymerase Chain Reaction (PCR) Book Chapter In: Branco, Miguel R; de Mendoza Soler, Alexandre (Ed.): Transposable Elements: Methods and Protocols, pp. 95–114, Springer US, New York, NY, 2023, ISBN: 978-1-0716-2883-6. @inbook{Merenciano2023,
title = {Experimental Validation of Transposable Element Insertions Using the Polymerase Chain Reaction (PCR)},
author = {Miriam Merenciano and Marta Coronado-Zamora and Josefa González},
editor = {Miguel R Branco and Alexandre de Mendoza Soler},
url = {https://doi.org/10.1007/978-1-0716-2883-6_6
https://ecoevorxiv.org/g5xhz/},
doi = {10.1007/978-1-0716-2883-6_6},
isbn = {978-1-0716-2883-6},
year = {2023},
date = {2023-01-01},
urldate = {2023-01-01},
booktitle = {Transposable Elements: Methods and Protocols},
pages = {95--114},
publisher = {Springer US},
address = {New York, NY},
abstract = {Transposable elements (TEs), also known as transposons, are repetitive DNA sequences, present in virtually all organisms, that can move from one genomic position to another. TEs can be a source of mutations with important consequences for organisms. Despite their interest, its repetitive nature has made their study very challenging. However, the emergence of new sequencing technologies that allow obtaining long-read sequences, has improved the in silico de novo detection and annotation of TEs. The de novo annotation of TEs has already been performed in several organisms including the fruit fly Drosophila melanogaster. Yet, experimental validation can be used to confirm the presence of TEs in specific D. melanogaster natural populations. Here, we present a step-by-step protocol to experimentally validate by polymerase chain reaction (PCR) the presence and/or absence of TEs in natural populations of D. melanogaster. This detailed protocol has been implemented in the participant high schools of the Citizen Fly Lab activity that is part of the international citizen science project Melanogaster: Catch the Fly! (https://melanogaster.eu). Specifically, the students collaborate with the scientists of the European Drosophila Population Genomics Consortium (DrosEU) in the experimental validation of new genetic variants, previously identified using bioinformatic techniques.},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
Transposable elements (TEs), also known as transposons, are repetitive DNA sequences, present in virtually all organisms, that can move from one genomic position to another. TEs can be a source of mutations with important consequences for organisms. Despite their interest, its repetitive nature has made their study very challenging. However, the emergence of new sequencing technologies that allow obtaining long-read sequences, has improved the in silico de novo detection and annotation of TEs. The de novo annotation of TEs has already been performed in several organisms including the fruit fly Drosophila melanogaster. Yet, experimental validation can be used to confirm the presence of TEs in specific D. melanogaster natural populations. Here, we present a step-by-step protocol to experimentally validate by polymerase chain reaction (PCR) the presence and/or absence of TEs in natural populations of D. melanogaster. This detailed protocol has been implemented in the participant high schools of the Citizen Fly Lab activity that is part of the international citizen science project Melanogaster: Catch the Fly! (https://melanogaster.eu). Specifically, the students collaborate with the scientists of the European Drosophila Population Genomics Consortium (DrosEU) in the experimental validation of new genetic variants, previously identified using bioinformatic techniques. |
2022
|
| Green, Llewellyn; Coronado-Zamora, Marta; Radío, Santiago; Rech, Gabriel E; Salces-Ortiz, Judit; González, Josefa The genomic basis of copper tolerance in Drosophila is shaped by a complex interplay of regulatory and environmental factors Journal Article In: BMC Biology, vol. 20, no. 1, 2022. @article{Green2022b,
title = {The genomic basis of copper tolerance in Drosophila is shaped by a complex interplay of regulatory and environmental factors},
author = {Llewellyn Green and Marta Coronado-Zamora and Santiago Radío and Gabriel E Rech and Judit Salces-Ortiz and Josefa González},
url = {https://doi.org/10.1186/s12915-022-01479-w},
doi = {10.1186/s12915-022-01479-w},
year = {2022},
date = {2022-12-08},
journal = {BMC Biology},
volume = {20},
number = {1},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Brandt, Miriam; Groom, Quentin; Magro, Alexandra; Misevic, Dusan; Narraway, Claire L; Bruckermann, Till; Beniermann, Anna; Børsen, Tom; González, Josefa; Meeus, Sofie; Roy, Helen E; Sá-Pinto, Xana; Torres, Jorge Roberto; Jenkins, Tania Promoting scientific literacy in evolution through citizen science Journal Article In: Proceedings of the Royal Society B: Biological Sciences, vol. 289, no. 1980, 2022. @article{Brandt2022,
title = {Promoting scientific literacy in evolution through citizen science},
author = {Miriam Brandt and Quentin Groom and Alexandra Magro and Dusan Misevic and Claire L Narraway and Till Bruckermann and Anna Beniermann and Tom Børsen and Josefa González and Sofie Meeus and Helen E Roy and Xana Sá-Pinto and Jorge Roberto Torres and Tania Jenkins},
url = {https://doi.org/10.1098/rspb.2022.1077},
doi = {10.1098/rspb.2022.1077},
year = {2022},
date = {2022-08-10},
journal = {Proceedings of the Royal Society B: Biological Sciences},
volume = {289},
number = {1980},
publisher = {The Royal Society},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Rech, Gabriel E; Radío, Santiago; Guirao-Rico, Sara; Aguilera, Laura; Horvath, Vivien; Green, Llewellyn; Lindstadt, Hannah; Jamilloux, Véronique; Quesneville, Hadi; González, Josefa Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila Journal Article In: Nature Communications, vol. 13, no. 1, 2022. @article{Rech2022b,
title = {Population-scale long-read sequencing uncovers transposable elements associated with gene expression variation and adaptive signatures in Drosophila},
author = {Gabriel E Rech and Santiago Radío and Sara Guirao-Rico and Laura Aguilera and Vivien Horvath and Llewellyn Green and Hannah Lindstadt and Véronique Jamilloux and Hadi Quesneville and Josefa González},
url = {https://doi.org/10.1038/s41467-022-29518-8},
doi = {10.1038/s41467-022-29518-8},
year = {2022},
date = {2022-04-12},
journal = {Nature Communications},
volume = {13},
number = {1},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Coronado-Zamora, Marta; González, Josefa Transposable elements and adaptation Book Chapter Forthcoming In: Capy, Pierre (Ed.): ISTE, Forthcoming. @inbook{Marta,
title = {Transposable elements and adaptation},
author = {Marta Coronado-Zamora and Josefa González},
editor = {Pierre Capy},
year = {2022},
date = {2022-02-10},
publisher = {ISTE},
keywords = {},
pubstate = {forthcoming},
tppubtype = {inbook}
}
|
| Vargas-Chavez, Carlos; Pendy, Neil Michel Longo; Nsango, Sandrine E; Aguilera, Laura; Ayala, Diego; González, Josefa Transposable element variants and their potential adaptive impact in urban populations of the malaria vector Anopheles coluzzii Journal Article In: Genome Research, 2022. @article{VargasChavez2021,
title = {Transposable element variants and their potential adaptive impact in urban populations of the malaria vector Anopheles coluzzii},
author = {Carlos Vargas-Chavez and Neil Michel Longo Pendy and Sandrine E Nsango and Laura Aguilera and Diego Ayala and Josefa González},
url = {https://doi.org/10.1101/gr.275761.121},
doi = {10.1101/gr.275761.121},
year = {2022},
date = {2022-01-31},
journal = {Genome Research},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2021
|
| Ullastres, Anna; Merenciano, Miriam; González, Josefa Regulatory regions in natural transposable element insertions drive interindividual differences in response to immune challenges in Drosophila Journal Article In: Genome Biology, vol. 22, no. 1, 2021. @article{Ullastres2021c,
title = {Regulatory regions in natural transposable element insertions drive interindividual differences in response to immune challenges in Drosophila},
author = {Anna Ullastres and Miriam Merenciano and Josefa González},
url = {https://doi.org/10.1186/s13059-021-02471-3},
doi = {10.1186/s13059-021-02471-3},
year = {2021},
date = {2021-09-14},
journal = {Genome Biology},
volume = {22},
number = {1},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Kapun, Martin; Nunez, Joaquin C B; Bogaerts-Márquez, María; Murga-Moreno, Jesús; Paris, Margot; Outten, Joseph; Coronado-Zamora, Marta; Tern, Courtney; Rota-Stabelli, Omar; Garcia-Guerreiro, Maria P; Casillas, Sònia; Orengo, Dorcas J; Puerma, Eva; Kankare, Maaria; Ometto, Lino; Loeschcke, Volker; Onder, Banu S; Abbott, Jessica K; Schaeffer, Stephen W; Rajpurohit, Subhash; Behrman, Emily L; Schou, Mads F; Merritt, Thomas J S; Lazzaro, Brian P; Glaser-Schmitt, Amanda; Argyridou, Eliza; Staubach, Fabian; Wang, Yun; Tauber, Eran; Serga, Svitlana V; Fabian, Daniel K; Dyer, Kelly A; Wheat, Christopher W; Parsch, John; Grath, Sonja; Veselinovic, Marija Savic; Stamenkovic-Radak, Marina; Jelic, Mihailo; Buendía-Ruíz, Antonio J; Gómez-Julián, María Josefa; Espinosa-Jimenez, Luisa M; Gallardo-Jiménez, Francisco D.; Patenkovic, Aleksandra; Eric, Katarina; Tanaskovic, Marija; Ullastres, Anna; Guio, Lain; Merenciano, Miriam; Guirao-Rico, Sara; Horváth, Vivien; Obbard, Darren J; Pasyukova, Elena; Alatortsev, Vladimir E; Vieira, Cristina P; Vieira, Jorge; Torres, J Roberto; Kozeretska, Iryna; Maistrenko, Oleksandr M; Montchamp-Moreau, Catherine; Mukha, Dmitry V; Machado, Heather E; Lamb, Keric; Paulo, Tania; Yusuf, Leeban; Barbadilla, Antonio; Petrov, Dmitri; Schmidt, Paul; Gonzalez, Josefa; Flatt, Thomas; Bergland, Alan O Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource Journal Article In: Molecular Biology and Evolution, vol. 38, pp. 5782-5805, 2021. @article{Kapun2021,
title = {Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource},
author = {Martin Kapun and Joaquin C B Nunez and María Bogaerts-Márquez and Jesús Murga-Moreno and Margot Paris and Joseph Outten and Marta Coronado-Zamora and Courtney Tern and Omar Rota-Stabelli and Maria P Garcia-Guerreiro and Sònia Casillas and Dorcas J Orengo and Eva Puerma and Maaria Kankare and Lino Ometto and Volker Loeschcke and Banu S Onder and Jessica K Abbott and Stephen W Schaeffer and Subhash Rajpurohit and Emily L Behrman and Mads F Schou and Thomas J S Merritt and Brian P Lazzaro and Amanda Glaser-Schmitt and Eliza Argyridou and Fabian Staubach and Yun Wang and Eran Tauber and Svitlana V Serga and Daniel K Fabian and Kelly A Dyer and Christopher W Wheat and John Parsch and Sonja Grath and Marija Savic Veselinovic and Marina Stamenkovic-Radak and Mihailo Jelic and Antonio J Buendía-Ruíz and María Josefa Gómez-Julián and Luisa M Espinosa-Jimenez and Francisco D. Gallardo-Jiménez and Aleksandra Patenkovic and Katarina Eric and Marija Tanaskovic and Anna Ullastres and Lain Guio and Miriam Merenciano and Sara Guirao-Rico and Vivien Horváth and Darren J Obbard and Elena Pasyukova and Vladimir E Alatortsev and Cristina P Vieira and Jorge Vieira and J Roberto Torres and Iryna Kozeretska and Oleksandr M Maistrenko and Catherine Montchamp-Moreau and Dmitry V Mukha and Heather E Machado and Keric Lamb and Tania Paulo and Leeban Yusuf and Antonio Barbadilla and Dmitri Petrov and Paul Schmidt and Josefa Gonzalez and Thomas Flatt and Alan O Bergland},
editor = {Rasmus Nielsen},
url = {https://doi.org/10.1093/molbev/msab259},
doi = {10.1093/molbev/msab259},
year = {2021},
date = {2021-09-01},
journal = {Molecular Biology and Evolution},
volume = {38},
pages = {5782-5805},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Machado, Heather; Bergland, Alan O; Taylor, Ryan; Tilk, Susanne; Behrman, Emily; Dyer, Kelly; Fabian, Daniel; Flatt, Thomas; Gonzalez, Josefa; Karasov, Talia; Kozeretska, Iryna; Lazzaro, Brian P; Merritt, Thomas; Pool, John; textquotesingle, Katherine O; Rajpurohit, Subhash; Roy, Paula; Schaeffer, Stephen; Serga, Svitlana; Schmidt, Paul; Petrov, Dmitri Broad geographic sampling reveals predictable and pervasive seasonal adaptation in Drosophila Journal Article In: eLife, 2021. @article{Machado2018,
title = {Broad geographic sampling reveals predictable and pervasive seasonal adaptation in Drosophila},
author = {Heather Machado and Alan O Bergland and Ryan Taylor and Susanne Tilk and Emily Behrman and Kelly Dyer and Daniel Fabian and Thomas Flatt and Josefa Gonzalez and Talia Karasov and Iryna Kozeretska and Brian P Lazzaro and Thomas Merritt and John Pool and Katherine O textquotesingle and Subhash Rajpurohit and Paula Roy and Stephen Schaeffer and Svitlana Serga and Paul Schmidt and Dmitri Petrov},
url = {https://elifesciences.org/articles/67577},
doi = {10.7554/eLife.67577},
year = {2021},
date = {2021-06-22},
journal = {eLife},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Hub, Consortium; Elliott, Tyler; Heitkam, Tony; Hubley, Robert; Quesneville, Hadi; Suh, Alexander; Wheeler, Travis TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation Journal Article In: Mobile DNA, vol. 12, no. 1, 2021. @article{2021c,
title = {TE Hub: A community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation},
author = {Consortium Hub and Tyler Elliott and Tony Heitkam and Robert Hubley and Hadi Quesneville and Alexander Suh and Travis Wheeler},
url = {https://doi.org/10.1186/s13100-021-00244-0
https://blogs.biomedcentral.com/on-biology/2021/06/15/introducing-the-te-hub-a-platform-for-researchers-in-transposable-elements/},
doi = {10.1186/s13100-021-00244-0},
year = {2021},
date = {2021-06-21},
journal = {Mobile DNA},
volume = {12},
number = {1},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Wallace, Megan A; Coffman, Kelsey A; Gilbert, Clément; Ravindran, Sanjana; Albery, Gregory F; Abbott, Jessica; Argyridou, Eliza; Bellosta, Paola; Betancourt, Andrea J; Colinet, Hervé; Eric, Katarina; Glaser-Schmitt, Amanda; Grath, Sonja; Jelic, Mihailo; Kankare, Maaria; Kozeretska, Iryna; Loeschcke, Volker; Montchamp-Moreau, Catherine; Ometto, Lino; Onder, Banu Sebnem; Orengo, Dorcas J; Parsch, John; Pascual, Marta; Patenkovic, Aleksandra; Puerma, Eva; Ritchie, Michael G; Rota-Stabelli, Omar; Schou, Mads Fristrup; Serga, Svitlana V; Stamenkovic-Radak, Marina; Tanaskovic, Marija; Veselinovic, Marija Savic; Vieira, Jorge; Vieira, Cristina P; Kapun, Martin; Flatt, Thomas; González, Josefa; Staubach, Fabian; Obbard, Darren J The discovery, distribution and diversity of DNA viruses associated with Drosophila melanogaster in Europe Journal Article In: Virus Evolution, 2021. @article{Wallace2021,
title = {The discovery, distribution and diversity of DNA viruses associated with Drosophila melanogaster in Europe},
author = {Megan A Wallace and Kelsey A Coffman and Clément Gilbert and Sanjana Ravindran and Gregory F Albery and Jessica Abbott and Eliza Argyridou and Paola Bellosta and Andrea J Betancourt and Hervé Colinet and Katarina Eric and Amanda Glaser-Schmitt and Sonja Grath and Mihailo Jelic and Maaria Kankare and Iryna Kozeretska and Volker Loeschcke and Catherine Montchamp-Moreau and Lino Ometto and Banu Sebnem Onder and Dorcas J Orengo and John Parsch and Marta Pascual and Aleksandra Patenkovic and Eva Puerma and Michael G Ritchie and Omar Rota-Stabelli and Mads Fristrup Schou and Svitlana V Serga and Marina Stamenkovic-Radak and Marija Tanaskovic and Marija Savic Veselinovic and Jorge Vieira and Cristina P Vieira and Martin Kapun and Thomas Flatt and Josefa González and Fabian Staubach and Darren J Obbard},
url = {https://doi.org/10.1093/ve/veab031},
doi = {10.1093/ve/veab031},
year = {2021},
date = {2021-04-01},
journal = {Virus Evolution},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Casares, Fernando; Maeso, Ignacio; González, Josefa; Gómez-Mestre, Ivan; Nieto, Angela; Poyatos, Juan F. The Genesis of the Phenotype Book Chapter In: Bovolenta, Paola; Manzanares, Miguel; Buceta, Javier (Ed.): Editorial CSIC, 2021. @inbook{book,
title = {The Genesis of the Phenotype},
author = {Fernando Casares and Ignacio Maeso and Josefa González and Ivan Gómez-Mestre and Angela Nieto and Juan F. Poyatos},
editor = {Paola Bovolenta and Miguel Manzanares and Javier Buceta},
url = {https://libros.csic.es/product_info.php?products_id=1459},
year = {2021},
date = {2021-03-01},
publisher = {Editorial CSIC},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
| Guirao-Rico, Sara; González, Josefa Benchmarking the performance of Pool-seq SNP callers using simulated and real sequencing data Journal Article In: Molecular Ecology Resources, vol. 21, pp. 1216–1229, 2021. @article{bib,
title = {Benchmarking the performance of Pool-seq SNP callers using simulated and real sequencing data},
author = {Sara Guirao-Rico and Josefa González},
url = {https://onlinelibrary.wiley.com/doi/abs/10.1111/1755-0998.13343},
year = {2021},
date = {2021-02-19},
journal = {Molecular Ecology Resources},
volume = {21},
pages = {1216–1229},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Bogaerts-Márquez, María; Guirao-Rico, Sara; Gautier, Mathieu; González, Josefa Temperature, rainfall and wind variables underlie environmental adaptation in natural populations of Drosophila melanogaster Journal Article In: Molecular Ecology, vol. 30, no. 4, pp. 938–954, 2021. @article{BogaertsMrquez2021,
title = {Temperature, rainfall and wind variables underlie environmental adaptation in natural populations of Drosophila melanogaster},
author = {María Bogaerts-Márquez and Sara Guirao-Rico and Mathieu Gautier and Josefa González},
url = {https://doi.org/10.1111/mec.15783},
doi = {10.1111/mec.15783},
year = {2021},
date = {2021-01-01},
journal = {Molecular Ecology},
volume = {30},
number = {4},
pages = {938--954},
publisher = {Wiley},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2020
|
| C. Ruiz-Arenas,; A. Cáceres,; M. López,; D. Pelegrí-Sisó,; J. González,; González, J. R Identifying chromosomal subpopulations based on their recombination histories advances the study of the genetic basis of phenotypic traits Journal Article In: Genome Research, 2020. @article{bioRxivb,
title = {Identifying chromosomal subpopulations based on their recombination histories advances the study of the genetic basis of phenotypic traits},
author = {Ruiz-Arenas, C., and Cáceres, A., and López, M., and Pelegrí-Sisó, D., and González, J., and González, J.R},
url = {https://genome.cshlp.org/content/early/2020/11/17/gr.258301.119},
year = {2020},
date = {2020-11-18},
journal = {Genome Research},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| González, Juan; Ruiz-Arenas, Carlos; Cáceres, Alejandro; Morán, Ignasi; López-Sánchez, Marcos; Alonso, Lorena; Tolosana, Ignacio; Guindo-Martínez, Marta; Mercader, Josep M; Esko, Tonu; Torrents, David; González, Josefa; Pérez-Jurado, Luis A Polymorphic Inversions Underlie the Shared Genetic Susceptibility of Obesity-Related Diseases Journal Article In: The American Journal of Human Genetics, 2020. @article{Gonzlez2020,
title = {Polymorphic Inversions Underlie the Shared Genetic Susceptibility of Obesity-Related Diseases},
author = {Juan González and Carlos Ruiz-Arenas and Alejandro Cáceres and Ignasi Morán and Marcos López-Sánchez and Lorena Alonso and Ignacio Tolosana and Marta Guindo-Martínez and Josep M Mercader and Tonu Esko and David Torrents and Josefa González and Luis A Pérez-Jurado},
url = {https://doi.org/10.1016/j.ajhg.2020.04.017
https://bit.ly/2B8TGCt},
doi = {10.1016/j.ajhg.2020.04.017},
year = {2020},
date = {2020-05-28},
journal = {The American Journal of Human Genetics},
publisher = {Elsevier BV},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Almudi, Isabel; Vizueta, Joel; Wyatt, Christopher D R; de Mendoza, Alex; Marlétaz, Ferdinand; Firbas, Panos N; Feuda, Roberto; Masiero, Giulio; Medina, Patricia; Alcaina-Caro, Ana; Cruz, Fernando; Gómez-Garrido, Jessica; Gut, Marta; Alioto, Tyler S; Vargas-Chavez, Carlos; Davie, Kristofer; Misof, Bernhard; González, Josefa; Aerts, Stein; Lister, Ryan; Paps, Jordi; Rozas, Julio; Sánchez-Gracia, Alejandro; Irimia, Manuel; Maeso, Ignacio; Casares, Fernando Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings Journal Article In: Nature Communications, vol. 11, no. 1, 2020. @article{Almudi2020,
title = {Genomic adaptations to aquatic and aerial life in mayflies and the origin of insect wings},
author = {Isabel Almudi and Joel Vizueta and Christopher D R Wyatt and Alex de Mendoza and Ferdinand Marlétaz and Panos N Firbas and Roberto Feuda and Giulio Masiero and Patricia Medina and Ana Alcaina-Caro and Fernando Cruz and Jessica Gómez-Garrido and Marta Gut and Tyler S Alioto and Carlos Vargas-Chavez and Kristofer Davie and Bernhard Misof and Josefa González and Stein Aerts and Ryan Lister and Jordi Paps and Julio Rozas and Alejandro Sánchez-Gracia and Manuel Irimia and Ignacio Maeso and Fernando Casares},
url = {https://doi.org/10.1038/s41467-020-16284-8},
doi = {10.1038/s41467-020-16284-8},
year = {2020},
date = {2020-05-26},
journal = {Nature Communications},
volume = {11},
number = {1},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Kapun, Martin; Barron, Maite; Staubach, Fabian; Vieira, Jorge; Obbard, Darren; Wiberg, Axel R W; Goubert, Clement; Stabelli, Omar Rota; Kankare, Maaria; Haudry, Annabelle; Bogaerts-Marquez, Maria; Waidele, Lena; Kozeretska, Iryna; Pasyukova, Elena; Loeschcke, Volker; Pascual, Marta; Vieira, Cristina P; Serga, Svitlana; Montchamp-Moreau, Catherine; Abbott, Jessica; Gibert, Patricia; Porcelli, Damiano; Posnien, Nico; Sanchez-Gracia, Alejandro; Grath, Sonja; Sucena, Elio; Bergland, Alan; Guerreiro, Maria Pilar Garcia; Onder, Banu Sebnem; Argyridou, Eliza; Guio, Lain; Schou, Mads Fristrup; Deplancke, Bart; Vieira, Cristina; Ritchie, Michael G; Zwaan, Bas; Tauber, Eran; Orengo, Dorcas; Puerma, Eva; Aguade, Montserrat; Schmidt, Paul; Parsch, John; Betancourt, Andrea; Flatt, Thomas; Gonzalez, Josefa Genomic analysis of European Drosophila populations reveals major longitudinal structure, continent-wide selection, and unknown DNA viruses Journal Article In: Molecular Biology and Evolution, vol. 37, no. 9, pp. 2661-2678, 2020. @article{Kapun2018,
title = {Genomic analysis of European Drosophila populations reveals major longitudinal structure, continent-wide selection, and unknown DNA viruses},
author = {Martin Kapun and Maite Barron and Fabian Staubach and Jorge Vieira and Darren Obbard and Axel R W Wiberg and Clement Goubert and Omar Rota Stabelli and Maaria Kankare and Annabelle Haudry and Maria Bogaerts-Marquez and Lena Waidele and Iryna Kozeretska and Elena Pasyukova and Volker Loeschcke and Marta Pascual and Cristina P Vieira and Svitlana Serga and Catherine Montchamp-Moreau and Jessica Abbott and Patricia Gibert and Damiano Porcelli and Nico Posnien and Alejandro Sanchez-Gracia and Sonja Grath and Elio Sucena and Alan Bergland and Maria Pilar Garcia Guerreiro and Banu Sebnem Onder and Eliza Argyridou and Lain Guio and Mads Fristrup Schou and Bart Deplancke and Cristina Vieira and Michael G Ritchie and Bas Zwaan and Eran Tauber and Dorcas Orengo and Eva Puerma and Montserrat Aguade and Paul Schmidt and John Parsch and Andrea Betancourt and Thomas Flatt and Josefa Gonzalez},
url = {https://academic.oup.com/mbe/advance-article/doi/10.1093/molbev/msaa120/5837682},
doi = {https://doi.org/10.1093/molbev/msaa120},
year = {2020},
date = {2020-05-15},
journal = {Molecular Biology and Evolution},
volume = {37},
number = {9},
pages = {2661-2678},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Bogaerts-Marquez, María; Barrón, Maite; Fiston-Lavier, Anna-Sophie; Vendrell-Mir, Pol; Castanera, Raúl; Casacuberta, Josep M; González, Josefa T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data Journal Article In: Bioinformatics, 2020. @article{BogaertsMrquez2019,
title = {T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data},
author = {María Bogaerts-Marquez and Maite Barrón and Anna-Sophie Fiston-Lavier and Pol Vendrell-Mir and Raúl Castanera and Josep M Casacuberta and Josefa González},
editor = {Russell Schwartz},
url = {https://doi.org/10.1093/bioinformatics/btz727},
doi = {10.1093/bioinformatics/btz727},
year = {2020},
date = {2020-02-15},
journal = {Bioinformatics},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Salces-Ortiz, Judit; Vargas-Chavez, Carlos; Guio, Lain; Rech, Gabriel E; Gonzalez, Josefa Transposable elements contribute to the genomic response to insecticides in Drosophila melanogaster Journal Article In: Philosophical Transactions of the Royal Society B: Biological Sciences, vol. 375, no. 1795, pp. 20190341, 2020. @article{SalcesOrtiz2020,
title = {Transposable elements contribute to the genomic response to insecticides in Drosophila melanogaster},
author = {Judit Salces-Ortiz and Carlos Vargas-Chavez and Lain Guio and Gabriel E Rech and Josefa Gonzalez},
url = {https://doi.org/10.1098/rstb.2019.0341},
doi = {10.1098/rstb.2019.0341},
year = {2020},
date = {2020-02-10},
journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
volume = {375},
number = {1795},
pages = {20190341},
publisher = {The Royal Society},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Vargas-Chávez, Carlos; González, Josefa Transposable Elements in Anopheles Species: Refining Annotation Strategies Towards Population Genomics Analyses Book Chapter In: Population Genomics, Springer International Publishing, 2020. @inbook{VargasChvez2020,
title = {Transposable Elements in Anopheles Species: Refining Annotation Strategies Towards Population Genomics Analyses},
author = {Carlos Vargas-Chávez and Josefa González},
url = {https://doi.org/10.1007/13836_2020_86},
doi = {10.1007/13836_2020_86},
year = {2020},
date = {2020-01-27},
booktitle = {Population Genomics},
publisher = {Springer International Publishing},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
| Rota-Stabelli, Omar; Ometto, Lino; Tait, Gabriella; Ghirotto, Silvia; Kaur, Rupinder; Drago, Francesco; González, Josefa; Walton, Vaughn M; Anfora, Gianfranco; Rossi-Stacconi, Marco Valerio Distinct genotypes and phenotypes in European and American strains of Drosophila suzukii: implications for biology and management of an invasive organism Journal Article In: Journal of Pest Science, vol. 93, no. 1, pp. 77–89, 2020. @article{RotaStabelli2019b,
title = {Distinct genotypes and phenotypes in European and American strains of Drosophila suzukii: implications for biology and management of an invasive organism},
author = {Omar Rota-Stabelli and Lino Ometto and Gabriella Tait and Silvia Ghirotto and Rupinder Kaur and Francesco Drago and Josefa González and Vaughn M Walton and Gianfranco Anfora and Marco Valerio Rossi-Stacconi},
url = {https://doi.org/10.1007/s10340-019-01172-y},
doi = {10.1007/s10340-019-01172-y},
year = {2020},
date = {2020-01-01},
journal = {Journal of Pest Science},
volume = {93},
number = {1},
pages = {77--89},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2019
|
| Vendrell-Mir, Pol; Barteri, Fabio; Merenciano, Miriam; González, Josefa; Casacuberta, Josep M; Castanera, Raúl A benchmark of transposon insertion detection tools using real data Journal Article In: Mobile DNA, vol. 10, no. 1, 2019. @article{VendrellMir2019,
title = {A benchmark of transposon insertion detection tools using real data},
author = {Pol Vendrell-Mir and Fabio Barteri and Miriam Merenciano and Josefa González and Josep M Casacuberta and Raúl Castanera},
url = {https://doi.org/10.1186/s13100-019-0197-9},
doi = {10.1186/s13100-019-0197-9},
year = {2019},
date = {2019-12-30},
journal = {Mobile DNA},
volume = {10},
number = {1},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Barrón, Maite; Paupy, Christophe; Rahola, Nil; Akone-Ella, Ousman; Ngangue, Marc F; Wilson-Bahun, Theodel A; Pombi, Marco; Kengne, Pierre; Costantini, Carlo; Simard, Frédéric; González, Josefa; Ayala, Diego A new species in the major malaria vector complex sheds light on reticulated species evolution Journal Article In: Scientific Reports, vol. 9, no. 1, 2019. @article{Barrn2019,
title = {A new species in the major malaria vector complex sheds light on reticulated species evolution},
author = {Maite Barrón and Christophe Paupy and Nil Rahola and Ousman Akone-Ella and Marc F Ngangue and Theodel A Wilson-Bahun and Marco Pombi and Pierre Kengne and Carlo Costantini and Frédéric Simard and Josefa González and Diego Ayala},
url = {https://doi.org/10.1038/s41598-019-49065-5},
doi = {10.1038/s41598-019-49065-5},
year = {2019},
date = {2019-10-14},
journal = {Scientific Reports},
volume = {9},
number = {1},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Guio, Lain; González, Josefa New Insights on the Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans Book Chapter In: Methods in Molecular Biology, pp. 505–530, Springer New York, 2019. @inbook{Guio2019,
title = {New Insights on the Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans},
author = {Lain Guio and Josefa González},
url = {https://doi.org/10.1007/978-1-4939-9074-0_16},
doi = {10.1007/978-1-4939-9074-0_16},
year = {2019},
date = {2019-07-06},
booktitle = {Methods in Molecular Biology},
pages = {505--530},
publisher = {Springer New York},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
| J.L. Villanueva-Cañas, Horvath; González, J. Diverse families of transposable elements affect the transcriptional regulation of stress-response genes in Drosophila melanogaster Journal Article In: Nucleic Acids Research, 2019. @article{2019d,
title = {Diverse families of transposable elements affect the transcriptional regulation of stress-response genes in Drosophila melanogaster },
author = {Villanueva-Cañas, J.L., Horvath, V., Aguilera;L., and González, J.},
url = {https://doi.org/10.1093/nar/gkz490},
doi = {10.1093/nar/gkz490},
year = {2019},
date = {2019-06-08},
journal = {Nucleic Acids Research},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Merenciano, Miriam; Iacometti, Camillo; González, Josefa A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster Journal Article In: Mobile DNA, vol. 10, no. 1, 2019. @article{Merenciano2019,
title = {A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster},
author = {Miriam Merenciano and Camillo Iacometti and Josefa González},
url = {https://doi.org/10.1186/s13100-019-0152-9},
doi = {10.1186/s13100-019-0152-9},
year = {2019},
date = {2019-03-14},
journal = {Mobile DNA},
volume = {10},
number = {1},
publisher = {Springer Nature},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Rech, Gabriel E; Bogaerts-Marquez, Maria; Barron, Maite G; Merenciano, Miriam; Villanueva-Canas, Jose L; Horvath, Vivien; Fiston-Lavier, Anna-Sophie; Luyten, Isabelle; Venkataram, Sandeep; Quesneville, Hadi; Petrov, Dmitri A; Gonzalez, Josefa Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. Journal Article In: PLoS Genetics, vol. 15 , no. 2, pp. e1007900, 2019. @article{Rech2018,
title = {Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. },
author = {Gabriel E Rech and Maria Bogaerts-Marquez and Maite G Barron and Miriam Merenciano and Jose L Villanueva-Canas and Vivien Horvath and Anna-Sophie Fiston-Lavier and Isabelle Luyten and Sandeep Venkataram and Hadi Quesneville and Dmitri A Petrov and Josefa Gonzalez},
url = {https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007900
https://www.ncbi.nlm.nih.gov/pubmed/30753202},
year = {2019},
date = {2019-02-13},
urldate = {2019-02-12},
journal = {PLoS Genetics},
volume = {15 },
number = {2},
pages = {e1007900},
publisher = {Cold Spring Harbor Laboratory},
organization = {PLoS Genetics},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Guirao-Rico, Sara; González, Josefa Evolutionary insights from large scale resequencing datasets in Drosophila melanogaster Journal Article In: Current Opinion in Insect Science, vol. 31, pp. 70-76, 2019. @article{COIS,
title = {Evolutionary insights from large scale resequencing datasets in Drosophila melanogaster},
author = {Sara Guirao-Rico and Josefa González},
url = {https://hdl.handle.net/10261/172876},
doi = {10.1016/j.cois.2018.11.002},
year = {2019},
date = {2019-02-01},
journal = {Current Opinion in Insect Science},
volume = {31},
pages = {70-76},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Clément Goubert Emmanuelle Lerat, Sara Guirao-Rico; González., Josefa Population specific dynamics and selection patterns of transposable element insertions in European natural populations Journal Article In: Molecular Ecology, 2019. @article{MolEcol,
title = {Population specific dynamics and selection patterns of transposable element insertions in European natural populations},
author = {Emmanuelle Lerat, Clément Goubert, Sara Guirao-Rico, Miriam Merenciano, Anne-Béatrice Dufour, Cristina Vieira, and Josefa González.},
doi = {10.1111/mec.14963},
year = {2019},
date = {2019-01-31},
journal = {Molecular Ecology},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2018
|
| Mateo, L; Rech, G; Gonzalez, J Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations Journal Article In: Scientific Reports, vol. 8, pp. 16143, 2018. @article{,
title = {Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations},
author = {L Mateo and G Rech and J Gonzalez},
doi = {10.1038/s41598-018-34267-0},
year = {2018},
date = {2018-11-01},
journal = {Scientific Reports},
volume = {8},
pages = {16143},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Guio, Lain; Vieira, Cristina; González, Josefa Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster Journal Article In: Scientific Reports, vol. 8, pp. 12197, 2018. @article{Guio2018,
title = {Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster},
author = {Lain Guio and Cristina Vieira and Josefa González},
url = {https://doi.org/10.1038/s41598-018-30491-w},
doi = {10.1038/s41598-018-30491-w},
year = {2018},
date = {2018-08-15},
journal = {Scientific Reports},
volume = {8},
pages = {12197},
publisher = {Springer Nature America, Inc},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Li, Zi-Wen; Hou, Xing-Hui; Chen, Jia-Fu; Xu, Yong-Chao; Josefa González Qiong Wu,; Guo, Ya-Long Transposable elements contribute to the adaptation of Arabidopsis thaliana Journal Article In: Genome Biology and Evolution, 2018. @article{Li2018,
title = {Transposable elements contribute to the adaptation of Arabidopsis thaliana},
author = {Zi-Wen Li and Xing-Hui Hou and Jia-Fu Chen and Yong-Chao Xu and Qiong Wu, Josefa González, and Ya-Long Guo},
url = {https://doi.org/10.1093/gbe/evy171},
doi = {10.1093/gbe/evy171},
year = {2018},
date = {2018-08-01},
journal = {Genome Biology and Evolution},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2017
|
| Horvath, V; Merenciano, M; Gonzalez, J Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response Journal Article In: Trends Genet, vol. 33, no. 11, pp. 832-841, 2017. @article{RN26,
title = {Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response},
author = {V Horvath and M Merenciano and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/28947157},
doi = {10.1016/j.tig.2017.08.007},
year = {2017},
date = {2017-01-01},
journal = {Trends Genet},
volume = {33},
number = {11},
pages = {832-841},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Villanueva-Cañas, J L; Rech, G E; de Cara, M A R; González, J Beyond SNPs: how to detect selection on transposable element insertions Journal Article In: Methods in Ecology and Evolution, vol. 8, no. 6, pp. 728-737, 2017. @article{RN37,
title = {Beyond SNPs: how to detect selection on transposable element insertions},
author = {J L Villanueva-Cañas and G E Rech and M A R de Cara and J González},
url = {https://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12781/full
https://methodsblog.wordpress.com/2017/06/26/transposable-elements/},
doi = {10.1111/2041-210x.12781},
year = {2017},
date = {2017-01-01},
journal = {Methods in Ecology and Evolution},
volume = {8},
number = {6},
pages = {728-737},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Manh, H Le; Guio, L; Merenciano, M; Rovira, Q; Barron, M G; Gonzalez, J Natural and laboratory mutations in kuzbanian are associated with zinc stress phenotypes in Drosophila melanogaster Journal Article In: Sci Rep, vol. 7, pp. 42663, 2017. @article{RN1n,
title = {Natural and laboratory mutations in kuzbanian are associated with zinc stress phenotypes in Drosophila melanogaster},
author = {H Le Manh and L Guio and M Merenciano and Q Rovira and M G Barron and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/28218276},
doi = {10.1038/srep42663},
year = {2017},
date = {2017-01-01},
journal = {Sci Rep},
volume = {7},
pages = {42663},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|