2020
|
| Bogaerts-Marquez, María; Barrón, Maite; Fiston-Lavier, Anna-Sophie; Vendrell-Mir, Pol; Castanera, Raúl; Casacuberta, Josep M; González, Josefa T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data Journal Article Bioinformatics, 2020. Links | BibTeX @article{BogaertsMrquez2019,
title = {T-lex3: an accurate tool to genotype and estimate population frequencies of transposable elements using the latest short-read whole genome sequencing data},
author = {María Bogaerts-Marquez and Maite Barrón and Anna-Sophie Fiston-Lavier and Pol Vendrell-Mir and Raúl Castanera and Josep M Casacuberta and Josefa González},
editor = {Russell Schwartz},
url = {https://doi.org/10.1093/bioinformatics/btz727},
doi = {10.1093/bioinformatics/btz727},
year = {2020},
date = {2020-10-03},
journal = {Bioinformatics},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Kapun, Martin; Aduriz, Maite Garazi Barron; Staubach, Fabian; Vieira, Jorge; Obbard, Darren; Goubert, Clement; Stabelli, Omar Rota; Kankare, Maaria; Haudry, Annabelle; Bogaerts-Marquez, Maria; Wiberg, Axel R W; Waidele, Lena; Kozeretska, Iryna; Pasyukova, Elena; Loeschcke, Volker; Pascual, Marta; Vieira, Cristina P; Serga, Svitlana; Montchamp-Moreau, Catherine; Abbott, Jessica; Gibert, Patricia; Porcelli, Damiano; Posnien, Nico; Sanchez-Gracia, Alejandro; Grath, Sonja; Sucena, Elio; Bergland, Alan; Guerreiro, Maria Pilar Garcia; Onder, Banu Sebnem; Argyridou, Eliza; Guio, Lain; Schou, Mads Fristrup; Deplancke, Bart; Vieira, Cristina; Ritchie, Michael G; Zwaan, Bas; Tauber, Eran; Orengo, Dorcas; Puerma, Eva; Aguade, Montserrat; Schmidt, Paul; Parsch, John; Betancourt, Andrea; Flatt, Thomas; Gonzalez, Josefa Genomic analysis of European Drosophila populations reveals major longitudinal structure, continent-wide selection, and unknown DNA viruses Online 2020. Links | BibTeX @online{Kapun2018,
title = {Genomic analysis of European Drosophila populations reveals major longitudinal structure, continent-wide selection, and unknown DNA viruses},
author = {Martin Kapun and Maite Garazi Barron Aduriz and Fabian Staubach and Jorge Vieira and Darren Obbard and Clement Goubert and Omar Rota Stabelli and Maaria Kankare and Annabelle Haudry and Maria Bogaerts-Marquez and Axel R W Wiberg and Lena Waidele and Iryna Kozeretska and Elena Pasyukova and Volker Loeschcke and Marta Pascual and Cristina P Vieira and Svitlana Serga and Catherine Montchamp-Moreau and Jessica Abbott and Patricia Gibert and Damiano Porcelli and Nico Posnien and Alejandro Sanchez-Gracia and Sonja Grath and Elio Sucena and Alan Bergland and Maria Pilar Garcia Guerreiro and Banu Sebnem Onder and Eliza Argyridou and Lain Guio and Mads Fristrup Schou and Bart Deplancke and Cristina Vieira and Michael G Ritchie and Bas Zwaan and Eran Tauber and Dorcas Orengo and Eva Puerma and Montserrat Aguade and Paul Schmidt and John Parsch and Andrea Betancourt and Thomas Flatt and Josefa Gonzalez},
url = {https://doi.org/10.1101/313759},
doi = {10.1101/313759},
year = {2020},
date = {2020-03-11},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| Salces-Ortiz, Judit; Vargas-Chavez, Carlos; Guio, Lain; Rech, Gabriel E; Gonzalez, Josefa Transposable elements contribute to the genomic response to insecticides in Drosophila melanogaster Journal Article Philosophical Transactions of the Royal Society B: Biological Sciences, 375 (1795), pp. 20190341, 2020. Links | BibTeX @article{SalcesOrtiz2020,
title = {Transposable elements contribute to the genomic response to insecticides in Drosophila melanogaster},
author = {Judit Salces-Ortiz and Carlos Vargas-Chavez and Lain Guio and Gabriel E Rech and Josefa Gonzalez},
url = {https://doi.org/10.1098/rstb.2019.0341},
doi = {10.1098/rstb.2019.0341},
year = {2020},
date = {2020-02-10},
journal = {Philosophical Transactions of the Royal Society B: Biological Sciences},
volume = {375},
number = {1795},
pages = {20190341},
publisher = {The Royal Society},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2019
|
| Almudi, Isabel; Vizueta, Joel; de Mendoza, Alex; Wyatt, Chris; Marletaz, Ferdinand; Firbas, Panos; Feuda, Roberto; Masiero, Giulio; Medina, Patricia; Alcaina, Ana; Cruz, Fernando; Gómez-Garrido, Jessica; Gut, Marta; Alioto, Tyler S; Vargas-Chave, Carlos; Davie, Kristofer; Misof, Bernhard; González, Josefa; Aerts, Stein; Lister, Ryan; Paps, Jordi; Rozas, Julio; Sánchez-Gracia, Alejandro; Irimia, Manuel; Maeso, Ignacio; Casares, Fernando Genomic adaptations to aquatic and aerial life in mayflies and the origin of wings in insects Online 2019. Links | BibTeX @online{,
title = {Genomic adaptations to aquatic and aerial life in mayflies and the origin of wings in insects},
author = {Isabel Almudi and Joel Vizueta and Alex de Mendoza and Chris Wyatt and Ferdinand Marletaz and Panos Firbas and Roberto Feuda and Giulio Masiero and Patricia Medina and Ana Alcaina and Fernando Cruz and Jessica Gómez-Garrido and Marta Gut and Tyler S. Alioto and Carlos Vargas-Chave and Kristofer Davie and Bernhard Misof and Josefa González and Stein Aerts and Ryan Lister and Jordi Paps and Julio Rozas and Alejandro Sánchez-Gracia and Manuel Irimia and Ignacio Maeso and Fernando Casares
},
url = {https://www.biorxiv.org/content/10.1101/2019.12.29.888636v1},
year = {2019},
date = {2019-12-30},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| Vendrell-Mir, Pol; Barteri, Fabio; Merenciano, Miriam; González, Josefa; Casacuberta, Josep M; Castanera, Raúl A benchmark of transposon insertion detection tools using real data Journal Article Mobile DNA, 10 (1), 2019. Links | BibTeX @article{VendrellMir2019,
title = {A benchmark of transposon insertion detection tools using real data},
author = {Pol Vendrell-Mir and Fabio Barteri and Miriam Merenciano and Josefa González and Josep M Casacuberta and Raúl Castanera},
url = {https://doi.org/10.1186/s13100-019-0197-9},
doi = {10.1186/s13100-019-0197-9},
year = {2019},
date = {2019-12-30},
journal = {Mobile DNA},
volume = {10},
number = {1},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| González, Juan R; Ruiz-Arenas, Carlos; Cáceres, Alejandro; Morán, Ignasi; López, Marcos; Alonso, Lorena; Tolosana, Ignacio; Guindo-Martínez, Marta; Mercader, Josep M; Esko, Tonu; andJosefa González, David
Torrents; Pérez-Jurado, Luis A Polymorphic inversions underlie the shared genetic susceptibility to prevalent common diseases Online 2019. Links | BibTeX @online{bioRxivc,
title = {Polymorphic inversions underlie the shared genetic susceptibility to prevalent common diseases},
author = {Juan R González and Carlos Ruiz-Arenas and Alejandro Cáceres and Ignasi Morán and Marcos López and
Lorena Alonso and Ignacio Tolosana and Marta Guindo-Martínez and Josep M Mercader and Tonu Esko and David
Torrents andJosefa González and Luis A Pérez-Jurado},
url = {https://www.biorxiv.org/content/10.1101/859280v1},
year = {2019},
date = {2019-11-29},
journal = {bioRxiv},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| Rota-Stabelli, Omar; Ometto, Lino; Tait, Gabriella; Ghirotto, Silvia; Kaur, Rupinder; Drago, Francesco; á, Josefa Gonz; Walton, Vaughn M; Anfora, Gianfranco; Rossi-Stacconi, Marco Valerio Distinct genotypes and phenotypes in European and American strains of Drosophila suzukii: implications for biology and management of an invasive organism Journal Article Journal of Pest Science, 2019. Links | BibTeX @article{RotaStabelli2019,
title = {Distinct genotypes and phenotypes in European and American strains of Drosophila suzukii: implications for biology and management of an invasive organism},
author = {Omar Rota-Stabelli and Lino Ometto and Gabriella Tait and Silvia Ghirotto and Rupinder Kaur and Francesco Drago and Josefa Gonz á and Vaughn M Walton and Gianfranco Anfora and Marco Valerio Rossi-Stacconi},
url = {https://doi.org/10.1007/s10340-019-01172-y},
doi = {10.1007/s10340-019-01172-y},
year = {2019},
date = {2019-11-06},
journal = {Journal of Pest Science},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Barrón, Maite; Paupy, Christophe; Rahola, Nil; Akone-Ella, Ousman; Ngangue, Marc F; Wilson-Bahun, Theodel A; Pombi, Marco; Kengne, Pierre; Costantini, Carlo; Simard, Frédéric; González, Josefa; Ayala, Diego A new species in the major malaria vector complex sheds light on reticulated species evolution Journal Article Scientific Reports, 9 (1), 2019. Links | BibTeX @article{Barrn2019,
title = {A new species in the major malaria vector complex sheds light on reticulated species evolution},
author = {Maite Barrón and Christophe Paupy and Nil Rahola and Ousman Akone-Ella and Marc F Ngangue and Theodel A Wilson-Bahun and Marco Pombi and Pierre Kengne and Carlo Costantini and Frédéric Simard and Josefa González and Diego Ayala},
url = {https://doi.org/10.1038/s41598-019-49065-5},
doi = {10.1038/s41598-019-49065-5},
year = {2019},
date = {2019-10-14},
journal = {Scientific Reports},
volume = {9},
number = {1},
publisher = {Springer Science and Business Media LLC},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Machado, Heather; Bergland, Alan O; Taylor, Ryan; Tilk, Susanne; Behrman, Emily; Dyer, Kelly; Fabian, Daniel; Flatt, Thomas; Gonzalez, Josefa; Karasov, Talia; Kozeretska, Iryna; Lazzaro, Brian P; Merritt, Thomas; Pool, John; textquotesingle, Katherine O; Rajpurohit, Subhash; Roy, Paula; Schaeffer, Stephen; Serga, Svitlana; Schmidt, Paul; Petrov, Dmitri Broad geographic sampling reveals predictable and pervasive seasonal adaptation in Drosophila Online 2019. Links | BibTeX @online{Machado2018,
title = {Broad geographic sampling reveals predictable and pervasive seasonal adaptation in Drosophila},
author = {Heather Machado and Alan O Bergland and Ryan Taylor and Susanne Tilk and Emily Behrman and Kelly Dyer and Daniel Fabian and Thomas Flatt and Josefa Gonzalez and Talia Karasov and Iryna Kozeretska and Brian P Lazzaro and Thomas Merritt and John Pool and Katherine O textquotesingle and Subhash Rajpurohit and Paula Roy and Stephen Schaeffer and Svitlana Serga and Paul Schmidt and Dmitri Petrov},
url = {https://doi.org/10.1101/337543},
doi = {10.1101/337543v3},
year = {2019},
date = {2019-10-11},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| Ruiz-Arenas C., ; Cáceres A., ; López M., ; Pelegrí-Sisó D., ; González J., ; González, J R Historical recombination variability contributes to deciphering the genetic basis of phenotypic traits Online 2019. Links | BibTeX @online{bioRxivb,
title = {Historical recombination variability contributes to deciphering the genetic basis of phenotypic traits},
author = {Ruiz-Arenas, C., and Cáceres, A., and López, M., and Pelegrí-Sisó, D., and González, J., and González, J.R},
doi = {10.1101/792747},
year = {2019},
date = {2019-10-04},
journal = {bioRxiv},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| Guio, Lain; González, Josefa New Insights on the Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans Book Chapter Methods in Molecular Biology, pp. 505–530, Springer New York, 2019. Links | BibTeX @inbook{Guio2019,
title = {New Insights on the Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans},
author = {Lain Guio and Josefa González},
url = {https://doi.org/10.1007/978-1-4939-9074-0_16},
doi = {10.1007/978-1-4939-9074-0_16},
year = {2019},
date = {2019-07-06},
booktitle = {Methods in Molecular Biology},
pages = {505--530},
publisher = {Springer New York},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
| Villanueva-Cañas J.L., Horvath Aguilera;L. V; González, J Diverse families of transposable elements affect the transcriptional regulation of stress-response genes in Drosophila melanogaster Journal Article Nucleic Acids Research, 2019. Links | BibTeX @article{2019d,
title = {Diverse families of transposable elements affect the transcriptional regulation of stress-response genes in Drosophila melanogaster },
author = {Villanueva-Cañas, J.L., Horvath, V., Aguilera;L., and González, J.},
url = {https://doi.org/10.1093/nar/gkz490},
doi = {10.1093/nar/gkz490},
year = {2019},
date = {2019-06-08},
journal = {Nucleic Acids Research},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Anna Ullastres, Miriam Merenciano ; Gonzalez, Josefa Natural transposable element insertions drive expression changes in genes underlying Drosophila immune response Online 2019. Links | BibTeX @online{bioRxiv,
title = {Natural transposable element insertions drive expression changes in genes underlying Drosophila immune response},
author = {Anna Ullastres, Miriam Merenciano and Josefa Gonzalez},
url = {https://www.biorxiv.org/content/10.1101/655225v1},
year = {2019},
date = {2019-05-31},
journal = {bioRxiv},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| Merenciano, Miriam; Iacometti, Camillo; González, Josefa A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster Journal Article Mobile DNA, 10 (1), 2019. Links | BibTeX @article{Merenciano2019,
title = {A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster},
author = {Miriam Merenciano and Camillo Iacometti and Josefa González},
url = {https://doi.org/10.1186/s13100-019-0152-9},
doi = {10.1186/s13100-019-0152-9},
year = {2019},
date = {2019-03-14},
journal = {Mobile DNA},
volume = {10},
number = {1},
publisher = {Springer Nature},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
 | Rech, Gabriel E; Bogaerts-Marquez, Maria; Barron, Maite G; Merenciano, Miriam; Villanueva-Canas, Jose L; Horvath, Vivien; Fiston-Lavier, Anna-Sophie; Luyten, Isabelle; Venkataram, Sandeep; Quesneville, Hadi; Petrov, Dmitri A; Gonzalez, Josefa Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. Journal Article PLoS Genetics, 15 (2), pp. e1007900, 2019. Links | BibTeX @article{Rech2018,
title = {Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. },
author = {Gabriel E Rech and Maria Bogaerts-Marquez and Maite G Barron and Miriam Merenciano and Jose L Villanueva-Canas and Vivien Horvath and Anna-Sophie Fiston-Lavier and Isabelle Luyten and Sandeep Venkataram and Hadi Quesneville and Dmitri A Petrov and Josefa Gonzalez},
url = {https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007900
https://www.ncbi.nlm.nih.gov/pubmed/30753202},
year = {2019},
date = {2019-02-13},
urldate = {2019-02-12},
journal = {PLoS Genetics},
volume = {15 },
number = {2},
pages = {e1007900},
publisher = {Cold Spring Harbor Laboratory},
organization = {PLoS Genetics},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Guirao-Rico, Sara; González, Josefa Evolutionary insights from large scale resequencing datasets in Drosophila melanogaster Journal Article Current Opinion in Insect Science, 31 , pp. 70-76, 2019. Links | BibTeX @article{COIS,
title = {Evolutionary insights from large scale resequencing datasets in Drosophila melanogaster},
author = {Sara Guirao-Rico and Josefa González},
url = {http://hdl.handle.net/10261/172876},
doi = {10.1016/j.cois.2018.11.002},
year = {2019},
date = {2019-02-01},
journal = {Current Opinion in Insect Science},
volume = {31},
pages = {70-76},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Emmanuelle Lerat Clément Goubert, Sara Guirao-Rico Miriam Merenciano Anne-Béatrice Dufour Cristina Vieira ; González., Josefa Population specific dynamics and selection patterns of transposable element insertions in European natural populations Journal Article Molecular Ecology, 2019. Links | BibTeX @article{MolEcol,
title = {Population specific dynamics and selection patterns of transposable element insertions in European natural populations},
author = {Emmanuelle Lerat, Clément Goubert, Sara Guirao-Rico, Miriam Merenciano, Anne-Béatrice Dufour, Cristina Vieira, and Josefa González.},
doi = {10.1111/mec.14963},
year = {2019},
date = {2019-01-31},
journal = {Molecular Ecology},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2018
|
| Mateo, L; Rech, G; Gonzalez, J Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations Journal Article Scientific Reports, 8 , pp. 16143, 2018. Links | BibTeX @article{,
title = {Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations},
author = {L Mateo and G Rech and J Gonzalez},
doi = {10.1038/s41598-018-34267-0},
year = {2018},
date = {2018-11-01},
journal = {Scientific Reports},
volume = {8},
pages = {16143},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Guio, Lain; Vieira, Cristina; González, Josefa Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster Journal Article Scientific Reports, 8 , pp. 12197, 2018. Links | BibTeX @article{Guio2018,
title = {Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster},
author = {Lain Guio and Cristina Vieira and Josefa González},
url = {https://doi.org/10.1038/s41598-018-30491-w},
doi = {10.1038/s41598-018-30491-w},
year = {2018},
date = {2018-08-15},
journal = {Scientific Reports},
volume = {8},
pages = {12197},
publisher = {Springer Nature America, Inc},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Li, Zi-Wen; Hou, Xing-Hui; Chen, Jia-Fu; Xu, Yong-Chao; Qiong Wu Josefa González, ; Guo, Ya-Long Transposable elements contribute to the adaptation of Arabidopsis thaliana Journal Article Genome Biology and Evolution, 2018. Links | BibTeX @article{Li2018,
title = {Transposable elements contribute to the adaptation of Arabidopsis thaliana},
author = {Zi-Wen Li and Xing-Hui Hou and Jia-Fu Chen and Yong-Chao Xu and Qiong Wu, Josefa González, and Ya-Long Guo},
url = {https://doi.org/10.1093/gbe/evy171},
doi = {10.1093/gbe/evy171},
year = {2018},
date = {2018-08-01},
journal = {Genome Biology and Evolution},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2017
|
| Horvath, V; Merenciano, M; Gonzalez, J Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response Journal Article Trends Genet, 33 (11), pp. 832-841, 2017. Links | BibTeX @article{RN26,
title = {Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response},
author = {V Horvath and M Merenciano and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/28947157},
doi = {10.1016/j.tig.2017.08.007},
year = {2017},
date = {2017-01-01},
journal = {Trends Genet},
volume = {33},
number = {11},
pages = {832-841},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
 | Villanueva-Cañas, J L; Rech, G E; de Cara, M A R; González, J Beyond SNPs: how to detect selection on transposable element insertions Journal Article Methods in Ecology and Evolution, 8 (6), pp. 728-737, 2017. Links | BibTeX @article{RN37,
title = {Beyond SNPs: how to detect selection on transposable element insertions},
author = {J L Villanueva-Cañas and G E Rech and M A R de Cara and J González},
url = {http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12781/full
https://methodsblog.wordpress.com/2017/06/26/transposable-elements/},
doi = {10.1111/2041-210x.12781},
year = {2017},
date = {2017-01-01},
journal = {Methods in Ecology and Evolution},
volume = {8},
number = {6},
pages = {728-737},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Manh, Le H; Guio, L; Merenciano, M; Rovira, Q; Barron, M G; Gonzalez, J Natural and laboratory mutations in kuzbanian are associated with zinc stress phenotypes in Drosophila melanogaster Journal Article Sci Rep, 7 , pp. 42663, 2017. Links | BibTeX @article{RN1n,
title = {Natural and laboratory mutations in kuzbanian are associated with zinc stress phenotypes in Drosophila melanogaster},
author = {H Le Manh and L Guio and M Merenciano and Q Rovira and M G Barron and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/28218276},
doi = {10.1038/srep42663},
year = {2017},
date = {2017-01-01},
journal = {Sci Rep},
volume = {7},
pages = {42663},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2016
|
| Bergland, A O; Tobler, R; Gonzalez, J; Schmidt, P; Petrov, D A Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster Journal Article Mol Ecol., 25 (5), pp. 34, 2016. Links | BibTeX @article{RN4,
title = {Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster},
author = {A O Bergland and R Tobler and J Gonzalez and P Schmidt and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/26547394
https://onlinelibrary.wiley.com/doi/full/10.1111/mec.13534
https://haldanessieve.org/2014/09/15/secondary-contact-and-local-adaptation-contribute-to-genome-wide-patterns-of-clinal-variation-in-drosophila-melanogaster/},
doi = {10.1101/009084},
year = {2016},
date = {2016-01-01},
journal = {Mol Ecol.},
volume = {25},
number = {5},
pages = {34},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
 | Merenciano, M; Ullastres, A; de Cara, M A R; Barron, M G; Gonzalez, J Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila Journal Article PLoS Genet, 12 (8), pp. e1006249, 2016. Links | BibTeX @article{RN31,
title = {Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila},
author = {M Merenciano and A Ullastres and M A R de Cara and M G Barron and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/27517860
},
doi = {10.1371/journal.pgen.1006249},
year = {2016},
date = {2016-01-01},
journal = {PLoS Genet},
volume = {12},
number = {8},
pages = {e1006249},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Ullastres, A; Merenciano, M; Guio, L; González, J Transposable elements: a toolkit for stress and environmental adaptation in bacteria Book Chapter de Bruijn, Frans J (Ed.): Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria, Chapter 20.10, JohnWiley & Sons, Inc., First edition, 2016. Links | BibTeX @inbook{RN40,
title = {Transposable elements: a toolkit for stress and environmental adaptation in bacteria},
author = {A Ullastres and M Merenciano and L Guio and J González},
editor = {Frans J de Bruijn},
url = {http://onlinelibrary.wiley.com/doi/10.1002/9781119004813.ch11/summary},
doi = {10.1002/9781119004813.ch11},
year = {2016},
date = {2016-01-01},
booktitle = {Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria},
publisher = {JohnWiley & Sons, Inc.},
edition = {First edition},
chapter = {20.10},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
2015
|
| Gonzalez, J; Martinez, J; Makalowski, W Lack of population differentiation patterns of previously identified putatively adaptive transposable element insertions at microgeographic scales Journal Article Biol Direct, 10 , pp. 50, 2015. Links | BibTeX @article{RN12,
title = {Lack of population differentiation patterns of previously identified putatively adaptive transposable element insertions at microgeographic scales},
author = {J Gonzalez and J Martinez and W Makalowski},
url = {https://www.ncbi.nlm.nih.gov/pubmed/26463587},
doi = {10.1186/s13062-015-0075-4},
year = {2015},
date = {2015-01-01},
journal = {Biol Direct},
volume = {10},
pages = {50},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Fiston-Lavier, A S; Barron, M G; Petrov, D A; Gonzalez, J T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data Journal Article Nucleic Acids Res, 43 (4), pp. e22, 2015. Links | BibTeX @article{RN10,
title = {T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data},
author = {A S Fiston-Lavier and M G Barron and D A Petrov and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/25510498},
doi = {10.1093/nar/gku1250},
year = {2015},
date = {2015-01-01},
journal = {Nucleic Acids Res},
volume = {43},
number = {4},
pages = {e22},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Guio, L; Gonzalez, J The dominance effect of the adaptive transposable element insertion Bari-Jheh depends on the genetic background Journal Article Genome Biol Evol, 7 (5), pp. 1260-6, 2015. Links | BibTeX @article{RN24,
title = {The dominance effect of the adaptive transposable element insertion Bari-Jheh depends on the genetic background},
author = {L Guio and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/25912044},
doi = {10.1093/gbe/evv071},
year = {2015},
date = {2015-01-01},
journal = {Genome Biol Evol},
volume = {7},
number = {5},
pages = {1260-6},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
 | Ullastres, A; Petit, N; González, J Exploring the phenotypic space and the evolutionary history of a natural mutation in Drosophila melanogaster Journal Article Molecular Biology and Evolution, 32 (7), 2015. Links | BibTeX @article{RN36,
title = {Exploring the phenotypic space and the evolutionary history of a natural mutation in Drosophila melanogaster},
author = {A Ullastres and N Petit and J González},
url = {https://www.ncbi.nlm.nih.gov/pubmed/?term=ullastres+petit+gonzalez
https://haldanessieve.org/2014/10/30/exploring-the-phenotypic-space-and-the-evolutionary-history-of-a-natural-mutation-in-drosophila-melanogaster/
},
doi = {10.1101/010918},
year = {2015},
date = {2015-01-01},
journal = {Molecular Biology and Evolution},
volume = {32},
number = {7},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2014
|
 | Ayala, D; Ullastres, A; Gonzalez, J Adaptation through chromosomal inversions in Anopheles Journal Article Front Genet, 5 , pp. 129, 2014. Links | BibTeX @article{RN1b,
title = {Adaptation through chromosomal inversions in Anopheles},
author = {D Ayala and A Ullastres and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/24904633
http://portal.prbb.org/informacion/ibe-csic-upf-adaptation-in-the-anopheles-mosquito/685},
doi = {10.3389/fgene.2014.00129},
year = {2014},
date = {2014-01-01},
journal = {Front Genet},
volume = {5},
pages = {129},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Barron, M G; Fiston-Lavier, A S; Petrov, D A; Gonzalez, J Population genomics of transposable elements in Drosophila Journal Article Annu Rev Genet, 48 , pp. 561-81, 2014. Links | BibTeX @article{RN3,
title = {Population genomics of transposable elements in Drosophila},
author = {M G Barron and A S Fiston-Lavier and D A Petrov and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/25292358},
doi = {10.1146/annurev-genet-120213-092359},
year = {2014},
date = {2014-01-01},
journal = {Annu Rev Genet},
volume = {48},
pages = {561-81},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Guio, L; Barron, M G; Gonzalez, J The transposable element Bari-Jheh mediates oxidative stress response in Drosophila Journal Article Mol Ecol, 23 (8), pp. 2020-30, 2014. Links | BibTeX @article{RN25,
title = {The transposable element Bari-Jheh mediates oxidative stress response in Drosophila},
author = {L Guio and M G Barron and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/24629106},
doi = {10.1111/mec.12711},
year = {2014},
date = {2014-01-01},
journal = {Mol Ecol},
volume = {23},
number = {8},
pages = {2020-30},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
 | Mateo, L; Gonzalez, J Pogo-like transposases have been repeatedly domesticated into CENP-B-related proteins Journal Article Genome Biol Evol, 6 (8), pp. 2008-16, 2014. Links | BibTeX @article{RN30,
title = {Pogo-like transposases have been repeatedly domesticated into CENP-B-related proteins},
author = {L Mateo and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/25062917
http://portal.prbb.org/informacion/ibe-csic-upf-pogo-like-transposases-have-been-repeatedly-domesticated-into-cenp-b-related-proteins/748},
doi = {10.1093/gbe/evu153},
year = {2014},
date = {2014-01-01},
journal = {Genome Biol Evol},
volume = {6},
number = {8},
pages = {2008-16},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
 | Mateo, L; Ullastres, A; Gonzalez, J A transposable element insertion confers xenobiotic resistance in Drosophila Journal Article PLoS Genet, 10 (8), pp. e1004560, 2014. Links | BibTeX @article{RN29,
title = {A transposable element insertion confers xenobiotic resistance in Drosophila},
author = {L Mateo and A Ullastres and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/25122208
http://portal.prbb.org/informacion/ibe-csic-upf-discovered-how-a-transposable-element-insertion-confers-xenobiotic-resistance-in-drosophila/747},
doi = {10.1371/journal.pgen.1004560},
year = {2014},
date = {2014-01-01},
journal = {PLoS Genet},
volume = {10},
number = {8},
pages = {e1004560},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2013
|
| Casacuberta, E; Gonzalez, J The impact of transposable elements in environmental adaptation Journal Article Mol Ecol, 22 (6), pp. 1503-17, 2013. Links | BibTeX @article{RN7,
title = {The impact of transposable elements in environmental adaptation},
author = {E Casacuberta and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/23293987},
doi = {10.1111/mec.12170},
year = {2013},
date = {2013-01-01},
journal = {Mol Ecol},
volume = {22},
number = {6},
pages = {1503-17},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2012
|
| Calvete, O; Gonzalez, J; Betran, E; Ruiz, A Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila Journal Article Mol Biol Evol, 29 (7), pp. 1875-89, 2012. Links | BibTeX @article{RN5,
title = {Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila},
author = {O Calvete and J Gonzalez and E Betran and A Ruiz},
url = {https://www.ncbi.nlm.nih.gov/pubmed/22328714},
doi = {10.1093/molbev/mss067},
year = {2012},
date = {2012-01-01},
journal = {Mol Biol Evol},
volume = {29},
number = {7},
pages = {1875-89},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| González, J; Petrov, D A Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans Book Chapter Methods in Molecular Biology, 2012. Links | BibTeX @inbook{RN42,
title = {Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans},
author = {J González and D A Petrov },
url = {https://www.ncbi.nlm.nih.gov/pubmed/22407716},
doi = {10.1007/978-1-61779-582-4_13},
year = {2012},
date = {2012-01-01},
booktitle = {Methods in Molecular Biology},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
 | Zhu, Y; Bergland, A O; Gonzalez, J; Petrov, D A Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster Journal Article PLoS One, 7 (7), pp. e41901, 2012. Links | BibTeX @article{RN38,
title = {Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster},
author = {Y Zhu and A O Bergland and J Gonzalez and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/22848651},
doi = {10.1371/journal.pone.0041901},
year = {2012},
date = {2012-01-01},
journal = {PLoS One},
volume = {7},
number = {7},
pages = {e41901},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2011
|
| Fiston-Lavier, A S; Carrigan, M; Petrov, D A; Gonzalez, J T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data Journal Article Nucleic Acids Res, 39 (6), pp. e36, 2011. Links | BibTeX @article{RN11,
title = {T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data},
author = {A S Fiston-Lavier and M Carrigan and D A Petrov and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/21177644},
doi = {10.1093/nar/gkq1291},
year = {2011},
date = {2011-01-01},
journal = {Nucleic Acids Res},
volume = {39},
number = {6},
pages = {e36},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Petrov, D A; Fiston-Lavier, A S; Lipatov, M; Lenkov, K; Gonzalez, J Population genomics of transposable elements in Drosophila melanogaster Journal Article Mol Biol Evol, 28 (5), pp. 1633-44, 2011. Links | BibTeX @article{RN32,
title = {Population genomics of transposable elements in Drosophila melanogaster},
author = {D A Petrov and A S Fiston-Lavier and M Lipatov and K Lenkov and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/21172826},
doi = {10.1093/molbev/msq337},
year = {2011},
date = {2011-01-01},
journal = {Mol Biol Evol},
volume = {28},
number = {5},
pages = {1633-44},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2010
|
 | Gonzalez, J; Karasov, T L; Messer, P W; Petrov, D A Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila Journal Article PLoS Genet, 6 (4), pp. e1000905, 2010. Links | BibTeX @article{RN17,
title = {Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila},
author = {J Gonzalez and T L Karasov and P W Messer and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/20386746
https://f1000.com/prime/3346960#recommendations},
doi = {10.1371/journal.pgen.1000905},
year = {2010},
date = {2010-01-01},
journal = {PLoS Genet},
volume = {6},
number = {4},
pages = {e1000905},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2009
|
| Gonzalez, J; Macpherson, J M; Messer, P W; Petrov, D A Inferring the strength of selection in Drosophila under complex demographic models Journal Article Mol Biol Evol, 26 (3), pp. 513-26, 2009. Links | BibTeX @article{RN21,
title = {Inferring the strength of selection in Drosophila under complex demographic models},
author = {J Gonzalez and J M Macpherson and P W Messer and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/19033258},
doi = {10.1093/molbev/msn270},
year = {2009},
date = {2009-01-01},
journal = {Mol Biol Evol},
volume = {26},
number = {3},
pages = {513-26},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Gonzalez, J; Macpherson, J M; Petrov, D A A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster Journal Article Mol Biol Evol, 26 (9), pp. 1949-61, 2009. Links | BibTeX @article{RN20,
title = {A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster},
author = {J Gonzalez and J M Macpherson and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/19458110},
doi = {10.1093/molbev/msp107},
year = {2009},
date = {2009-01-01},
journal = {Mol Biol Evol},
volume = {26},
number = {9},
pages = {1949-61},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Barker, J S; Frydenberg, J; Gonzalez, J; Davies, H I; Ruiz, A; Sorensen, J G; Loeschcke, V Bottlenecks, population differentiation and apparent selection at microsatellite loci in Australian Drosophila buzzatii Journal Article Heredity, 102 (4), pp. 389-401, 2009. Links | BibTeX @article{RN2,
title = {Bottlenecks, population differentiation and apparent selection at microsatellite loci in Australian Drosophila buzzatii},
author = {J S Barker and J Frydenberg and J Gonzalez and H I Davies and A Ruiz and J G Sorensen and V Loeschcke},
url = {https://www.ncbi.nlm.nih.gov/pubmed/19142202},
doi = {10.1038/hdy.2008.127},
year = {2009},
date = {2009-01-01},
journal = {Heredity},
volume = {102},
number = {4},
pages = {389-401},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Gonzalez, J; Petrov, D A The adaptive role of transposable elements in the Drosophila genome Journal Article Gene, 448 (2), pp. 124-33, 2009. Links | BibTeX @article{RN13,
title = {The adaptive role of transposable elements in the Drosophila genome},
author = {J Gonzalez and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/19555747},
doi = {10.1016/j.gene.2009.06.008},
year = {2009},
date = {2009-01-01},
journal = {Gene},
volume = {448},
number = {2},
pages = {124-33},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Gonzalez, J; Petrov, D A MITEs—The Ultimate Parasites Journal Article Science, 325 (5946) , pp. 1352-3, 2009. Links | BibTeX @article{RN14,
title = {MITEs—The Ultimate Parasites},
author = {J Gonzalez and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/19745141},
doi = {10.1126/science.1179556},
year = {2009},
date = {2009-01-01},
journal = {Science},
volume = {325 (5946)},
pages = {1352-3},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| da Costa, Prazeres O; Gonzalez, J; Ruiz, A Cloning and sequencing of the breakpoint regions of inversion 5g fixed in Drosophila buzzatii Journal Article Chromosoma, 118 (3), pp. 349-60, 2009. Links | BibTeX @article{RN33,
title = {Cloning and sequencing of the breakpoint regions of inversion 5g fixed in Drosophila buzzatii},
author = {O Prazeres da Costa and J Gonzalez and A Ruiz},
url = {https://www.ncbi.nlm.nih.gov/pubmed/19198866
http://www.uab.cat/servlet/Satellite?cid=1096481464166&pagename=UABDivulga/Page/TemplatePageDetallArticleInvestigar¶m1=1259046573545},
doi = {10.1007/s00412-008-0201-5},
year = {2009},
date = {2009-01-01},
journal = {Chromosoma},
volume = {118},
number = {3},
pages = {349-60},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2008
|
 | Gonzalez, J; Lenkov, K; Lipatov, M; Macpherson, J M; Petrov, D A High rate of recent transposable element-induced adaptation in Drosophila melanogaster Journal Article PLoS Biol, 6 (10), pp. e251, 2008. Links | BibTeX @article{RN19,
title = {High rate of recent transposable element-induced adaptation in Drosophila melanogaster},
author = {J Gonzalez and K Lenkov and M Lipatov and J M Macpherson and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/18942889
https://f1000.com/prime/1142010#recommendations},
doi = {10.1371/journal.pbio.0060251},
year = {2008},
date = {2008-01-01},
journal = {PLoS Biol},
volume = {6},
number = {10},
pages = {e251},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Macpherson, J M; Gonzalez, J; Witten, D M; Davis, J C; Rosenberg, N A; Hirsh, A E; Petrov, D A Nonadaptive explanations for signatures of partial selective sweeps in Drosophila Journal Article Mol Biol Evol, 25 (6), pp. 1025-42, 2008. Links | BibTeX @article{RN28,
title = {Nonadaptive explanations for signatures of partial selective sweeps in Drosophila},
author = {J M Macpherson and J Gonzalez and D M Witten and J C Davis and N A Rosenberg and A E Hirsh and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/18199829},
doi = {10.1093/molbev/msn007},
year = {2008},
date = {2008-01-01},
journal = {Mol Biol Evol},
volume = {25},
number = {6},
pages = {1025-42},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
