Publications

2018

Guio, Lain; Vieira, Cristina; González, Josefa

Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster Journal Article

Scientific Reports, 8 (1), 2018.

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Li, Zi-Wen; Hou, Xing-Hui; Chen, Jia-Fu; Xu, Yong-Chao; Wu, Qiong; á, Josefa Gonz; Guo, Ya-Long

Transposable elements contribute to the adaptation of Arabidopsis thaliana Journal Article

Genome Biology and Evolution, 2018.

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Rech, Gabriel E; Bogaerts-Marquez, Maria; Barron, Maite G; Merenciano, Miriam; Villanueva-Canas, Jose L; Horvath, Vivien; Fiston-Lavier, Anna-Sophie; Luyten, Isabelle; Venkataram, Sandeep; Quesneville, Hadi; Petrov, Dmitri A; Gonzalez, Josefa

Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila Online

2018.

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Kapun, M; Aduriz, MG Barron; Staubach, F; Vieira, J; Obbard, D; Goubert, C; Stabelli, Rota O; Kankare, M; Haudry, A; Wiberg, ARW; Waidele, L; Kozeretska, I; Pasyukova, E; Loeschcke, V; Pascual, M; Vieira, CP; Serga, S; Montchamp-Moreau, C; Abbott, J; Gibert, P; Porcelli, D; Posnien, N; Grath, S; Sucena, E; Bergland, A; Guerreiro, MP Garcia; Onder, BS; Argyridou, E; Guio, L; Schou, Fristrup M; Deplancke, B; Vieira, C; Ritchie, MG; Zwaan, B; Tauber, E; Orengo, D; Puerma, E; Aguade, M; Schmidt, P; Parsch, J; Betancourt, A; Flatt, T; Gonzalez, J

Genomic analysis of European Drosophila populations reveals longitudinal structure and continent-wide selection Online

2018.

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Machado, Heather; Bergland, Alan O; Taylor, Ryan; Tilk, Susanne; Behrman, Emily; Dyer, Kelly; Fabian, Daniel; Flatt, Thomas; Gonzalez, Josefa; Karasov, Talia; Kozeretska, Iryna; Lazzaro, Brian P; Merritt, Thomas; Pool, John; textquotesingle, Katherine O; Rajpurohit, Subhash; Roy, Paula; Schaeffer, Stephen; Serga, Svitlana; Schmidt, Paul; Petrov, Dmitri

Broad geographic sampling reveals predictable and pervasive seasonal adaptation in Drosophila Online

2018.

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Mateo, L; Rech, G; Gonzalez, J

Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations Journal Article Forthcoming

Scientific Reports, Forthcoming.

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Guio, L; González, J

New insights on the evolution of genome content: population dynamics of transposable elements in flies and humans Book Chapter Forthcoming

Methods in Molecular Biology, Forthcoming.

BibTeX

2017

Horvath, V; Merenciano, M; Gonzalez, J

Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response Journal Article

Trends Genet, 33 (11), pp. 832-841, 2017.

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Beyond SNPs: how to detect selection on transposable element insertions

Villanueva-Cañas, J L; Rech, G E; de Cara, M A R; González, J; Kelley, J

Beyond SNPs: how to detect selection on transposable element insertions Journal Article

Methods in Ecology and Evolution, 8 (6), pp. 728-737, 2017.

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Manh, Le H; Guio, L; Merenciano, M; Rovira, Q; Barron, M G; Gonzalez, J

Natural and laboratory mutations in kuzbanian are associated with zinc stress phenotypes in Drosophila melanogaster Journal Article

Sci Rep, 7 , pp. 42663, 2017.

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2016

Bergland, A O; Tobler, R; Gonzalez, J; Schmidt, P; Petrov, D A

Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster Journal Article

Mol Ecol., 25 (5), pp. 34, 2016.

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Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila

Merenciano, M; Ullastres, A; de Cara, M A R; Barron, M G; Gonzalez, J

Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila Journal Article

PLoS Genet, 12 (8), pp. e1006249, 2016.

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Ullastres, A; Merenciano, M; Guio, L; González, J

Transposable elements: a toolkit for stress and environmental adaptation in bacteria Book Chapter

de Bruijn, Frans J (Ed.): Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria, Chapter 20.10, JohnWiley & Sons, Inc., First edition, 2016.

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2015

Gonzalez, J; Martinez, J; Makalowski, W

Lack of population differentiation patterns of previously identified putatively adaptive transposable element insertions at microgeographic scales Journal Article

Biol Direct, 10 , pp. 50, 2015.

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Fiston-Lavier, A S; Barron, M G; Petrov, D A; Gonzalez, J

T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data Journal Article

Nucleic Acids Res, 43 (4), pp. e22, 2015.

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Guio, L; Gonzalez, J

The dominance effect of the adaptive transposable element insertion Bari-Jheh depends on the genetic background Journal Article

Genome Biol Evol, 7 (5), pp. 1260-6, 2015.

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Exploring the phenotypic space and the evolutionary history of a natural mutation in Drosophila melanogaster

Ullastres, A; Petit, N; González, J

Exploring the phenotypic space and the evolutionary history of a natural mutation in Drosophila melanogaster Journal Article

Discoveries, 32 (7), 2015.

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2014

Adaptation through chromosomal inversions in Anopheles

Ayala, D; Ullastres, A; Gonzalez, J

Adaptation through chromosomal inversions in Anopheles Journal Article

Front Genet, 5 , pp. 129, 2014.

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Barron, M G; Fiston-Lavier, A S; Petrov, D A; Gonzalez, J

Population genomics of transposable elements in Drosophila Journal Article

Annu Rev Genet, 48 , pp. 561-81, 2014.

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Guio, L; Barron, M G; Gonzalez, J

The transposable element Bari-Jheh mediates oxidative stress response in Drosophila Journal Article

Mol Ecol, 23 (8), pp. 2020-30, 2014.

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Pogo-like transposases have been repeatedly domesticated into CENP-B-related proteins

Mateo, L; Gonzalez, J

Pogo-like transposases have been repeatedly domesticated into CENP-B-related proteins Journal Article

Genome Biol Evol, 6 (8), pp. 2008-16, 2014.

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A transposable element insertion confers xenobiotic resistance in Drosophila

Mateo, L; Ullastres, A; Gonzalez, J

A transposable element insertion confers xenobiotic resistance in Drosophila Journal Article

PLoS Genet, 10 (8), pp. e1004560, 2014.

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2013

Casacuberta, E; Gonzalez, J

The impact of transposable elements in environmental adaptation Journal Article

Mol Ecol, 22 (6), pp. 1503-17, 2013.

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2012

Calvete, O; Gonzalez, J; Betran, E; Ruiz, A

Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila Journal Article

Mol Biol Evol, 29 (7), pp. 1875-89, 2012.

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González, J; Petrov, D A

Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans Book Chapter

Methods in Molecular Biology, 2012.

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Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster

Zhu, Y; Bergland, A O; Gonzalez, J; Petrov, D A

Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster Journal Article

PLoS One, 7 (7), pp. e41901, 2012.

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2011

Fiston-Lavier, A S; Carrigan, M; Petrov, D A; Gonzalez, J

T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data Journal Article

Nucleic Acids Res, 39 (6), pp. e36, 2011.

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Petrov, D A; Fiston-Lavier, A S; Lipatov, M; Lenkov, K; Gonzalez, J

Population genomics of transposable elements in Drosophila melanogaster Journal Article

Mol Biol Evol, 28 (5), pp. 1633-44, 2011.

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2010

Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila

Gonzalez, J; Karasov, T L; Messer, P W; Petrov, D A

Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila Journal Article

PLoS Genet, 6 (4), pp. e1000905, 2010.

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2009

Gonzalez, J; Macpherson, J M; Messer, P W; Petrov, D A

Inferring the strength of selection in Drosophila under complex demographic models Journal Article

Mol Biol Evol, 26 (3), pp. 513-26, 2009.

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Gonzalez, J; Macpherson, J M; Petrov, D A

A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster Journal Article

Mol Biol Evol, 26 (9), pp. 1949-61, 2009.

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Barker, J S; Frydenberg, J; Gonzalez, J; Davies, H I; Ruiz, A; Sorensen, J G; Loeschcke, V

Bottlenecks, population differentiation and apparent selection at microsatellite loci in Australian Drosophila buzzatii Journal Article

Heredity (Edinb), 102 (4), pp. 389-401, 2009.

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Gonzalez, J; Petrov, D A

The adaptive role of transposable elements in the Drosophila genome Journal Article

Gene, 448 (2), pp. 124-33, 2009.

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Gonzalez, J; Petrov, D A

MITEs—The Ultimate Parasites Journal Article

Science, 2009.

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da Costa, Prazeres O; Gonzalez, J; Ruiz, A

Cloning and sequencing of the breakpoint regions of inversion 5g fixed in Drosophila buzzatii Journal Article

Chromosoma, 118 (3), pp. 349-60, 2009.

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2008

High rate of recent transposable element-induced adaptation in Drosophila melanogaster

Gonzalez, J; Lenkov, K; Lipatov, M; Macpherson, J M; Petrov, D A

High rate of recent transposable element-induced adaptation in Drosophila melanogaster Journal Article

PLoS Biol, 6 (10), pp. e251, 2008.

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Macpherson, J M; Gonzalez, J; Witten, D M; Davis, J C; Rosenberg, N A; Hirsh, A E; Petrov, D A

Nonadaptive explanations for signatures of partial selective sweeps in Drosophila Journal Article

Mol Biol Evol, 25 (6), pp. 1025-42, 2008.

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2007

Gonzalez, J; Casals, F; Ruiz, A

Testing chromosomal phylogenies and inversion breakpoint reuse in Drosophila Journal Article

Genetics, 175 (1), pp. 167-77, 2007.

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2006

Casals, F; Gonzalez, J; Ruiz, A

Abundance and chromosomal distribution of six Drosophila buzzatii transposons: BuT1, BuT2, BuT3, BuT4, BuT5, and BuT6 Journal Article

Chromosoma, 115 (5), pp. 403-12, 2006.

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2005

Gonzalez, J; Nefedov, M; Bosdet, I; Casals, F; Calvete, O; Delprat, A; Shin, H; Chiu, R; Mathewson, C; Wye, N; Hoskins, R A; Schein, J E; de Jong, P; Ruiz, A

A BAC-based physical map of the Drosophila buzzatii genome Journal Article

Genome Res, 15 (6), pp. 885-92, 2005.

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Casals, F; Caceres, M; Manfrin, M H; Gonzalez, J; Ruiz, A

Molecular characterization and chromosomal distribution of Galileo, Kepler and Newton, three foldback transposable elements of the Drosophila buzzatii species complex Journal Article

Genetics, 169 (4), pp. 2047-59, 2005.

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2004

Gonzalez, J; Casals, F; Ruiz, A

Duplicative and conservative transpositions of larval serum protein 1 genes in the genus Drosophila Journal Article

Genetics, 168 (1), pp. 253-64, 2004.

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2003

Ranz, J M; Gonzalez, J; Casals, F; Ruiz, A

Low occurrence of gene transposition events during the evolution of the genus Drosophila Journal Article

Evolution, 57 (6), pp. 1325-1335, 2003.

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2002

González, J; Ranz, J M; Ruiz, A

Chromosomal Elements Evolve at Different Rates in the Drosophila Genome Journal Article

Genetics Society of America, 161 (3), 2002.

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2000

Gonzalez, J; Bertran, E; Ashburner, M; Ruiz, A

Molecular organization of the Drosophila melanogaster Adh chromosomal region in D. repleta and D. buzzatii, two distantly related species of the Drosophila subgenus Journal Article

Chromosome Research, 8 (5), pp. 375-385, 2000.

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