2019
|
| Maite G Barron Christophe Paupy, Nil Rahola Ousman Akone-Ella Marc Ngangue Theodel Wilson-Bahun Marco Pombi Pierre Kengne Carlo Costantini Frederic Simard Josefa Gonzalez Diego Ayala F A A new species in the Anopheles gambiae complex reveals new evolutionary relationships between vector and non-vector species Journal Article Forthcoming Scientific Reports (in press), Forthcoming. Links | BibTeX @article{Barron2018,
title = {A new species in the Anopheles gambiae complex reveals new evolutionary relationships between vector and non-vector species},
author = {Maite G Barron, Christophe Paupy, Nil Rahola, Ousman Akone-Ella, Marc F Ngangue, Theodel A Wilson-Bahun, Marco Pombi, Pierre Kengne, Carlo Costantini, Frederic Simard, Josefa Gonzalez, Diego Ayala},
url = {https://doi.org/10.1101/460667},
doi = {10.1101/460667},
year = {2019},
date = {2019-08-14},
journal = {Scientific Reports (in press)},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {forthcoming},
tppubtype = {article}
}
|
| Guio, Lain; González, Josefa New Insights on the Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans Book Chapter Methods in Molecular Biology, pp. 505–530, Springer New York, 2019. Links | BibTeX @inbook{Guio2019,
title = {New Insights on the Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans},
author = {Lain Guio and Josefa González},
url = {https://doi.org/10.1007/978-1-4939-9074-0_16},
doi = {10.1007/978-1-4939-9074-0_16},
year = {2019},
date = {2019-07-06},
booktitle = {Methods in Molecular Biology},
pages = {505--530},
publisher = {Springer New York},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
| Villanueva-Cañas J.L., Horvath Aguilera;L. V; González, J Diverse families of transposable elements affect the transcriptional regulation of stress-response genes in Drosophila melanogaster Journal Article Nucleic Acids Research, 2019. Links | BibTeX @article{2019d,
title = {Diverse families of transposable elements affect the transcriptional regulation of stress-response genes in Drosophila melanogaster },
author = {Villanueva-Cañas, J.L., Horvath, V., Aguilera;L., and González, J.},
url = {https://doi.org/10.1093/nar/gkz490},
doi = {10.1093/nar/gkz490},
year = {2019},
date = {2019-06-08},
journal = {Nucleic Acids Research},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Anna Ullastres, Miriam Merenciano ; Gonzalez, Josefa Natural transposable element insertions drive expression changes in genes underlying Drosophila immune response Online 2019. Links | BibTeX @online{bioRxiv,
title = {Natural transposable element insertions drive expression changes in genes underlying Drosophila immune response},
author = {Anna Ullastres, Miriam Merenciano and Josefa Gonzalez},
url = {https://www.biorxiv.org/content/10.1101/655225v1},
year = {2019},
date = {2019-05-31},
journal = {bioRxiv},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| Merenciano, Miriam; Iacometti, Camillo; González, Josefa A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster Journal Article Mobile DNA, 10 (1), 2019. Links | BibTeX @article{Merenciano2019,
title = {A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster},
author = {Miriam Merenciano and Camillo Iacometti and Josefa González},
url = {https://doi.org/10.1186/s13100-019-0152-9},
doi = {10.1186/s13100-019-0152-9},
year = {2019},
date = {2019-03-14},
journal = {Mobile DNA},
volume = {10},
number = {1},
publisher = {Springer Nature},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
 | Rech, Gabriel E; Bogaerts-Marquez, Maria; Barron, Maite G; Merenciano, Miriam; Villanueva-Canas, Jose L; Horvath, Vivien; Fiston-Lavier, Anna-Sophie; Luyten, Isabelle; Venkataram, Sandeep; Quesneville, Hadi; Petrov, Dmitri A; Gonzalez, Josefa Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. Journal Article PLoS Genetics, 15 (2), pp. e1007900, 2019. Links | BibTeX @article{Rech2018,
title = {Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila. },
author = {Gabriel E Rech and Maria Bogaerts-Marquez and Maite G Barron and Miriam Merenciano and Jose L Villanueva-Canas and Vivien Horvath and Anna-Sophie Fiston-Lavier and Isabelle Luyten and Sandeep Venkataram and Hadi Quesneville and Dmitri A Petrov and Josefa Gonzalez},
url = {https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1007900
https://www.ncbi.nlm.nih.gov/pubmed/30753202},
year = {2019},
date = {2019-02-13},
urldate = {2019-02-12},
journal = {PLoS Genetics},
volume = {15 },
number = {2},
pages = {e1007900},
publisher = {Cold Spring Harbor Laboratory},
organization = {PLoS Genetics},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Guirao-Rico, Sara; González, Josefa Evolutionary insights from large scale resequencing datasets in Drosophila melanogaster Journal Article Current Opinion in Insect Science, 31 , pp. 70-76, 2019. Links | BibTeX @article{COIS,
title = {Evolutionary insights from large scale resequencing datasets in Drosophila melanogaster},
author = {Sara Guirao-Rico and Josefa González},
url = {http://hdl.handle.net/10261/172876},
doi = {10.1016/j.cois.2018.11.002},
year = {2019},
date = {2019-02-01},
journal = {Current Opinion in Insect Science},
volume = {31},
pages = {70-76},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Emmanuelle Lerat Clément Goubert, Sara Guirao-Rico Miriam Merenciano Anne-Béatrice Dufour Cristina Vieira ; González., Josefa Population specific dynamics and selection patterns of transposable element insertions in European natural populations Journal Article Molecular Ecology, 2019. Links | BibTeX @article{MolEcol,
title = {Population specific dynamics and selection patterns of transposable element insertions in European natural populations},
author = {Emmanuelle Lerat, Clément Goubert, Sara Guirao-Rico, Miriam Merenciano, Anne-Béatrice Dufour, Cristina Vieira, and Josefa González.},
doi = {10.1111/mec.14963},
year = {2019},
date = {2019-01-31},
journal = {Molecular Ecology},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2018
|
| Mateo, L; Rech, G; Gonzalez, J Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations Journal Article Scientific Reports, 8 , pp. 16143, 2018. Links | BibTeX @article{,
title = {Genome-wide patterns of local adaptation in Western European Drosophila melanogaster natural populations},
author = {L Mateo and G Rech and J Gonzalez},
doi = {10.1038/s41598-018-34267-0},
year = {2018},
date = {2018-11-01},
journal = {Scientific Reports},
volume = {8},
pages = {16143},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Guio, Lain; Vieira, Cristina; González, Josefa Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster Journal Article Scientific Reports, 8 , pp. 12197, 2018. Links | BibTeX @article{Guio2018,
title = {Stress affects the epigenetic marks added by natural transposable element insertions in Drosophila melanogaster},
author = {Lain Guio and Cristina Vieira and Josefa González},
url = {https://doi.org/10.1038/s41598-018-30491-w},
doi = {10.1038/s41598-018-30491-w},
year = {2018},
date = {2018-08-15},
journal = {Scientific Reports},
volume = {8},
pages = {12197},
publisher = {Springer Nature America, Inc},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Li, Zi-Wen; Hou, Xing-Hui; Chen, Jia-Fu; Xu, Yong-Chao; Qiong Wu Josefa González, ; Guo, Ya-Long Transposable elements contribute to the adaptation of Arabidopsis thaliana Journal Article Genome Biology and Evolution, 2018. Links | BibTeX @article{Li2018,
title = {Transposable elements contribute to the adaptation of Arabidopsis thaliana},
author = {Zi-Wen Li and Xing-Hui Hou and Jia-Fu Chen and Yong-Chao Xu and Qiong Wu, Josefa González, and Ya-Long Guo},
url = {https://doi.org/10.1093/gbe/evy171},
doi = {10.1093/gbe/evy171},
year = {2018},
date = {2018-08-01},
journal = {Genome Biology and Evolution},
publisher = {Oxford University Press (OUP)},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Kapun, M; Aduriz, MG Barron; Staubach, F; Vieira, J; Obbard, D; Goubert, C; Stabelli, Rota O; Kankare, M; Haudry, A; Wiberg, ARW; Waidele, L; Kozeretska, I; Pasyukova, E; Loeschcke, V; Pascual, M; Vieira, CP; Serga, S; Montchamp-Moreau, C; Abbott, J; Gibert, P; Porcelli, D; Posnien, N; Grath, S; Sucena, E; Bergland, A; Guerreiro, MP Garcia; Onder, BS; Argyridou, E; Guio, L; Schou, Fristrup M; Deplancke, B; Vieira, C; Ritchie, MG; Zwaan, B; Tauber, E; Orengo, D; Puerma, E; Aguade, M; Schmidt, P; Parsch, J; Betancourt, A; Flatt, T; Gonzalez, J Genomic analysis of European Drosophila populations reveals longitudinal structure and continent-wide selection Online 2018. Links | BibTeX @online{Kapun313759,
title = {Genomic analysis of European Drosophila populations reveals longitudinal structure and continent-wide selection},
author = {M Kapun and MG Barron Aduriz and F Staubach and J Vieira and D Obbard and C Goubert and O Rota Stabelli and M Kankare and A Haudry and ARW Wiberg and L Waidele and I Kozeretska and E Pasyukova and V Loeschcke and M Pascual and CP Vieira and S Serga and C Montchamp-Moreau and J Abbott and P Gibert and D Porcelli and N Posnien and S Grath and E Sucena and A Bergland and MP Garcia Guerreiro and BS Onder and E Argyridou and L Guio and M Fristrup Schou and B Deplancke and C Vieira and MG Ritchie and B Zwaan and E Tauber and D Orengo and E Puerma and M Aguade and P Schmidt and J Parsch and A Betancourt and T Flatt and J Gonzalez},
url = {https://www.biorxiv.org/content/early/2018/06/04/313759},
doi = {10.1101/313759},
year = {2018},
date = {2018-06-04},
journal = {bioRxiv},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
| Machado, Heather; Bergland, Alan O; Taylor, Ryan; Tilk, Susanne; Behrman, Emily; Dyer, Kelly; Fabian, Daniel; Flatt, Thomas; Gonzalez, Josefa; Karasov, Talia; Kozeretska, Iryna; Lazzaro, Brian P; Merritt, Thomas; Pool, John; textquotesingle, Katherine O; Rajpurohit, Subhash; Roy, Paula; Schaeffer, Stephen; Serga, Svitlana; Schmidt, Paul; Petrov, Dmitri Broad geographic sampling reveals predictable and pervasive seasonal adaptation in Drosophila Online 2018. Links | BibTeX @online{Machado2018,
title = {Broad geographic sampling reveals predictable and pervasive seasonal adaptation in Drosophila},
author = {Heather Machado and Alan O Bergland and Ryan Taylor and Susanne Tilk and Emily Behrman and Kelly Dyer and Daniel Fabian and Thomas Flatt and Josefa Gonzalez and Talia Karasov and Iryna Kozeretska and Brian P Lazzaro and Thomas Merritt and John Pool and Katherine O textquotesingle and Subhash Rajpurohit and Paula Roy and Stephen Schaeffer and Svitlana Serga and Paul Schmidt and Dmitri Petrov},
url = {https://doi.org/10.1101/337543},
doi = {10.1101/337543},
year = {2018},
date = {2018-06-01},
publisher = {Cold Spring Harbor Laboratory},
keywords = {},
pubstate = {published},
tppubtype = {online}
}
|
2017
|
| Horvath, V; Merenciano, M; Gonzalez, J Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response Journal Article Trends Genet, 33 (11), pp. 832-841, 2017. Links | BibTeX @article{RN26,
title = {Revisiting the Relationship between Transposable Elements and the Eukaryotic Stress Response},
author = {V Horvath and M Merenciano and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/28947157},
doi = {10.1016/j.tig.2017.08.007},
year = {2017},
date = {2017-01-01},
journal = {Trends Genet},
volume = {33},
number = {11},
pages = {832-841},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
 | Villanueva-Cañas, J L; Rech, G E; de Cara, M A R; González, J Beyond SNPs: how to detect selection on transposable element insertions Journal Article Methods in Ecology and Evolution, 8 (6), pp. 728-737, 2017. Links | BibTeX @article{RN37,
title = {Beyond SNPs: how to detect selection on transposable element insertions},
author = {J L Villanueva-Cañas and G E Rech and M A R de Cara and J González},
url = {http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12781/full
https://methodsblog.wordpress.com/2017/06/26/transposable-elements/},
doi = {10.1111/2041-210x.12781},
year = {2017},
date = {2017-01-01},
journal = {Methods in Ecology and Evolution},
volume = {8},
number = {6},
pages = {728-737},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Manh, Le H; Guio, L; Merenciano, M; Rovira, Q; Barron, M G; Gonzalez, J Natural and laboratory mutations in kuzbanian are associated with zinc stress phenotypes in Drosophila melanogaster Journal Article Sci Rep, 7 , pp. 42663, 2017. Links | BibTeX @article{RN1n,
title = {Natural and laboratory mutations in kuzbanian are associated with zinc stress phenotypes in Drosophila melanogaster},
author = {H Le Manh and L Guio and M Merenciano and Q Rovira and M G Barron and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/28218276},
doi = {10.1038/srep42663},
year = {2017},
date = {2017-01-01},
journal = {Sci Rep},
volume = {7},
pages = {42663},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2016
|
| Bergland, A O; Tobler, R; Gonzalez, J; Schmidt, P; Petrov, D A Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster Journal Article Mol Ecol., 25 (5), pp. 34, 2016. Links | BibTeX @article{RN4,
title = {Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster},
author = {A O Bergland and R Tobler and J Gonzalez and P Schmidt and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/26547394
https://onlinelibrary.wiley.com/doi/full/10.1111/mec.13534
https://haldanessieve.org/2014/09/15/secondary-contact-and-local-adaptation-contribute-to-genome-wide-patterns-of-clinal-variation-in-drosophila-melanogaster/},
doi = {10.1101/009084},
year = {2016},
date = {2016-01-01},
journal = {Mol Ecol.},
volume = {25},
number = {5},
pages = {34},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
 | Merenciano, M; Ullastres, A; de Cara, M A R; Barron, M G; Gonzalez, J Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila Journal Article PLoS Genet, 12 (8), pp. e1006249, 2016. Links | BibTeX @article{RN31,
title = {Multiple Independent Retroelement Insertions in the Promoter of a Stress Response Gene Have Variable Molecular and Functional Effects in Drosophila},
author = {M Merenciano and A Ullastres and M A R de Cara and M G Barron and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/27517860
},
doi = {10.1371/journal.pgen.1006249},
year = {2016},
date = {2016-01-01},
journal = {PLoS Genet},
volume = {12},
number = {8},
pages = {e1006249},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Ullastres, A; Merenciano, M; Guio, L; González, J Transposable elements: a toolkit for stress and environmental adaptation in bacteria Book Chapter de Bruijn, Frans J (Ed.): Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria, Chapter 20.10, JohnWiley & Sons, Inc., First edition, 2016. Links | BibTeX @inbook{RN40,
title = {Transposable elements: a toolkit for stress and environmental adaptation in bacteria},
author = {A Ullastres and M Merenciano and L Guio and J González},
editor = {Frans J de Bruijn},
url = {http://onlinelibrary.wiley.com/doi/10.1002/9781119004813.ch11/summary},
doi = {10.1002/9781119004813.ch11},
year = {2016},
date = {2016-01-01},
booktitle = {Stress and Environmental Regulation of Gene Expression and Adaptation in Bacteria},
publisher = {JohnWiley & Sons, Inc.},
edition = {First edition},
chapter = {20.10},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
2015
|
| Gonzalez, J; Martinez, J; Makalowski, W Lack of population differentiation patterns of previously identified putatively adaptive transposable element insertions at microgeographic scales Journal Article Biol Direct, 10 , pp. 50, 2015. Links | BibTeX @article{RN12,
title = {Lack of population differentiation patterns of previously identified putatively adaptive transposable element insertions at microgeographic scales},
author = {J Gonzalez and J Martinez and W Makalowski},
url = {https://www.ncbi.nlm.nih.gov/pubmed/26463587},
doi = {10.1186/s13062-015-0075-4},
year = {2015},
date = {2015-01-01},
journal = {Biol Direct},
volume = {10},
pages = {50},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Fiston-Lavier, A S; Barron, M G; Petrov, D A; Gonzalez, J T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data Journal Article Nucleic Acids Res, 43 (4), pp. e22, 2015. Links | BibTeX @article{RN10,
title = {T-lex2: genotyping, frequency estimation and re-annotation of transposable elements using single or pooled next-generation sequencing data},
author = {A S Fiston-Lavier and M G Barron and D A Petrov and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/25510498},
doi = {10.1093/nar/gku1250},
year = {2015},
date = {2015-01-01},
journal = {Nucleic Acids Res},
volume = {43},
number = {4},
pages = {e22},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Guio, L; Gonzalez, J The dominance effect of the adaptive transposable element insertion Bari-Jheh depends on the genetic background Journal Article Genome Biol Evol, 7 (5), pp. 1260-6, 2015. Links | BibTeX @article{RN24,
title = {The dominance effect of the adaptive transposable element insertion Bari-Jheh depends on the genetic background},
author = {L Guio and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/25912044},
doi = {10.1093/gbe/evv071},
year = {2015},
date = {2015-01-01},
journal = {Genome Biol Evol},
volume = {7},
number = {5},
pages = {1260-6},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
 | Ullastres, A; Petit, N; González, J Exploring the phenotypic space and the evolutionary history of a natural mutation in Drosophila melanogaster Journal Article Molecular Biology and Evolution, 32 (7), 2015. Links | BibTeX @article{RN36,
title = {Exploring the phenotypic space and the evolutionary history of a natural mutation in Drosophila melanogaster},
author = {A Ullastres and N Petit and J González},
url = {https://www.ncbi.nlm.nih.gov/pubmed/?term=ullastres+petit+gonzalez
https://haldanessieve.org/2014/10/30/exploring-the-phenotypic-space-and-the-evolutionary-history-of-a-natural-mutation-in-drosophila-melanogaster/
},
doi = {10.1101/010918},
year = {2015},
date = {2015-01-01},
journal = {Molecular Biology and Evolution},
volume = {32},
number = {7},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2014
|
 | Ayala, D; Ullastres, A; Gonzalez, J Adaptation through chromosomal inversions in Anopheles Journal Article Front Genet, 5 , pp. 129, 2014. Links | BibTeX @article{RN1b,
title = {Adaptation through chromosomal inversions in Anopheles},
author = {D Ayala and A Ullastres and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/24904633
http://portal.prbb.org/informacion/ibe-csic-upf-adaptation-in-the-anopheles-mosquito/685},
doi = {10.3389/fgene.2014.00129},
year = {2014},
date = {2014-01-01},
journal = {Front Genet},
volume = {5},
pages = {129},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Barron, M G; Fiston-Lavier, A S; Petrov, D A; Gonzalez, J Population genomics of transposable elements in Drosophila Journal Article Annu Rev Genet, 48 , pp. 561-81, 2014. Links | BibTeX @article{RN3,
title = {Population genomics of transposable elements in Drosophila},
author = {M G Barron and A S Fiston-Lavier and D A Petrov and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/25292358},
doi = {10.1146/annurev-genet-120213-092359},
year = {2014},
date = {2014-01-01},
journal = {Annu Rev Genet},
volume = {48},
pages = {561-81},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Guio, L; Barron, M G; Gonzalez, J The transposable element Bari-Jheh mediates oxidative stress response in Drosophila Journal Article Mol Ecol, 23 (8), pp. 2020-30, 2014. Links | BibTeX @article{RN25,
title = {The transposable element Bari-Jheh mediates oxidative stress response in Drosophila},
author = {L Guio and M G Barron and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/24629106},
doi = {10.1111/mec.12711},
year = {2014},
date = {2014-01-01},
journal = {Mol Ecol},
volume = {23},
number = {8},
pages = {2020-30},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
 | Mateo, L; Gonzalez, J Pogo-like transposases have been repeatedly domesticated into CENP-B-related proteins Journal Article Genome Biol Evol, 6 (8), pp. 2008-16, 2014. Links | BibTeX @article{RN30,
title = {Pogo-like transposases have been repeatedly domesticated into CENP-B-related proteins},
author = {L Mateo and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/25062917
http://portal.prbb.org/informacion/ibe-csic-upf-pogo-like-transposases-have-been-repeatedly-domesticated-into-cenp-b-related-proteins/748},
doi = {10.1093/gbe/evu153},
year = {2014},
date = {2014-01-01},
journal = {Genome Biol Evol},
volume = {6},
number = {8},
pages = {2008-16},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
 | Mateo, L; Ullastres, A; Gonzalez, J A transposable element insertion confers xenobiotic resistance in Drosophila Journal Article PLoS Genet, 10 (8), pp. e1004560, 2014. Links | BibTeX @article{RN29,
title = {A transposable element insertion confers xenobiotic resistance in Drosophila},
author = {L Mateo and A Ullastres and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/25122208
http://portal.prbb.org/informacion/ibe-csic-upf-discovered-how-a-transposable-element-insertion-confers-xenobiotic-resistance-in-drosophila/747},
doi = {10.1371/journal.pgen.1004560},
year = {2014},
date = {2014-01-01},
journal = {PLoS Genet},
volume = {10},
number = {8},
pages = {e1004560},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2013
|
| Casacuberta, E; Gonzalez, J The impact of transposable elements in environmental adaptation Journal Article Mol Ecol, 22 (6), pp. 1503-17, 2013. Links | BibTeX @article{RN7,
title = {The impact of transposable elements in environmental adaptation},
author = {E Casacuberta and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/23293987},
doi = {10.1111/mec.12170},
year = {2013},
date = {2013-01-01},
journal = {Mol Ecol},
volume = {22},
number = {6},
pages = {1503-17},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2012
|
| Calvete, O; Gonzalez, J; Betran, E; Ruiz, A Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila Journal Article Mol Biol Evol, 29 (7), pp. 1875-89, 2012. Links | BibTeX @article{RN5,
title = {Segmental duplication, microinversion, and gene loss associated with a complex inversion breakpoint region in Drosophila},
author = {O Calvete and J Gonzalez and E Betran and A Ruiz},
url = {https://www.ncbi.nlm.nih.gov/pubmed/22328714},
doi = {10.1093/molbev/mss067},
year = {2012},
date = {2012-01-01},
journal = {Mol Biol Evol},
volume = {29},
number = {7},
pages = {1875-89},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| González, J; Petrov, D A Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans Book Chapter Methods in Molecular Biology, 2012. Links | BibTeX @inbook{RN42,
title = {Evolution of Genome Content: Population Dynamics of Transposable Elements in Flies and Humans},
author = {J González and D A Petrov },
url = {https://www.ncbi.nlm.nih.gov/pubmed/22407716},
doi = {10.1007/978-1-61779-582-4_13},
year = {2012},
date = {2012-01-01},
booktitle = {Methods in Molecular Biology},
keywords = {},
pubstate = {published},
tppubtype = {inbook}
}
|
 | Zhu, Y; Bergland, A O; Gonzalez, J; Petrov, D A Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster Journal Article PLoS One, 7 (7), pp. e41901, 2012. Links | BibTeX @article{RN38,
title = {Empirical validation of pooled whole genome population re-sequencing in Drosophila melanogaster},
author = {Y Zhu and A O Bergland and J Gonzalez and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/22848651},
doi = {10.1371/journal.pone.0041901},
year = {2012},
date = {2012-01-01},
journal = {PLoS One},
volume = {7},
number = {7},
pages = {e41901},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2011
|
| Fiston-Lavier, A S; Carrigan, M; Petrov, D A; Gonzalez, J T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data Journal Article Nucleic Acids Res, 39 (6), pp. e36, 2011. Links | BibTeX @article{RN11,
title = {T-lex: a program for fast and accurate assessment of transposable element presence using next-generation sequencing data},
author = {A S Fiston-Lavier and M Carrigan and D A Petrov and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/21177644},
doi = {10.1093/nar/gkq1291},
year = {2011},
date = {2011-01-01},
journal = {Nucleic Acids Res},
volume = {39},
number = {6},
pages = {e36},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Petrov, D A; Fiston-Lavier, A S; Lipatov, M; Lenkov, K; Gonzalez, J Population genomics of transposable elements in Drosophila melanogaster Journal Article Mol Biol Evol, 28 (5), pp. 1633-44, 2011. Links | BibTeX @article{RN32,
title = {Population genomics of transposable elements in Drosophila melanogaster},
author = {D A Petrov and A S Fiston-Lavier and M Lipatov and K Lenkov and J Gonzalez},
url = {https://www.ncbi.nlm.nih.gov/pubmed/21172826},
doi = {10.1093/molbev/msq337},
year = {2011},
date = {2011-01-01},
journal = {Mol Biol Evol},
volume = {28},
number = {5},
pages = {1633-44},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2010
|
 | Gonzalez, J; Karasov, T L; Messer, P W; Petrov, D A Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila Journal Article PLoS Genet, 6 (4), pp. e1000905, 2010. Links | BibTeX @article{RN17,
title = {Genome-wide patterns of adaptation to temperate environments associated with transposable elements in Drosophila},
author = {J Gonzalez and T L Karasov and P W Messer and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/20386746
https://f1000.com/prime/3346960#recommendations},
doi = {10.1371/journal.pgen.1000905},
year = {2010},
date = {2010-01-01},
journal = {PLoS Genet},
volume = {6},
number = {4},
pages = {e1000905},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2009
|
| Gonzalez, J; Macpherson, J M; Messer, P W; Petrov, D A Inferring the strength of selection in Drosophila under complex demographic models Journal Article Mol Biol Evol, 26 (3), pp. 513-26, 2009. Links | BibTeX @article{RN21,
title = {Inferring the strength of selection in Drosophila under complex demographic models},
author = {J Gonzalez and J M Macpherson and P W Messer and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/19033258},
doi = {10.1093/molbev/msn270},
year = {2009},
date = {2009-01-01},
journal = {Mol Biol Evol},
volume = {26},
number = {3},
pages = {513-26},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Gonzalez, J; Macpherson, J M; Petrov, D A A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster Journal Article Mol Biol Evol, 26 (9), pp. 1949-61, 2009. Links | BibTeX @article{RN20,
title = {A recent adaptive transposable element insertion near highly conserved developmental loci in Drosophila melanogaster},
author = {J Gonzalez and J M Macpherson and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/19458110},
doi = {10.1093/molbev/msp107},
year = {2009},
date = {2009-01-01},
journal = {Mol Biol Evol},
volume = {26},
number = {9},
pages = {1949-61},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Barker, J S; Frydenberg, J; Gonzalez, J; Davies, H I; Ruiz, A; Sorensen, J G; Loeschcke, V Bottlenecks, population differentiation and apparent selection at microsatellite loci in Australian Drosophila buzzatii Journal Article Heredity, 102 (4), pp. 389-401, 2009. Links | BibTeX @article{RN2,
title = {Bottlenecks, population differentiation and apparent selection at microsatellite loci in Australian Drosophila buzzatii},
author = {J S Barker and J Frydenberg and J Gonzalez and H I Davies and A Ruiz and J G Sorensen and V Loeschcke},
url = {https://www.ncbi.nlm.nih.gov/pubmed/19142202},
doi = {10.1038/hdy.2008.127},
year = {2009},
date = {2009-01-01},
journal = {Heredity},
volume = {102},
number = {4},
pages = {389-401},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Gonzalez, J; Petrov, D A The adaptive role of transposable elements in the Drosophila genome Journal Article Gene, 448 (2), pp. 124-33, 2009. Links | BibTeX @article{RN13,
title = {The adaptive role of transposable elements in the Drosophila genome},
author = {J Gonzalez and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/19555747},
doi = {10.1016/j.gene.2009.06.008},
year = {2009},
date = {2009-01-01},
journal = {Gene},
volume = {448},
number = {2},
pages = {124-33},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Gonzalez, J; Petrov, D A MITEs—The Ultimate Parasites Journal Article Science, 325 (5946) , pp. 1352-3, 2009. Links | BibTeX @article{RN14,
title = {MITEs—The Ultimate Parasites},
author = {J Gonzalez and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/19745141},
doi = {10.1126/science.1179556},
year = {2009},
date = {2009-01-01},
journal = {Science},
volume = {325 (5946)},
pages = {1352-3},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| da Costa, Prazeres O; Gonzalez, J; Ruiz, A Cloning and sequencing of the breakpoint regions of inversion 5g fixed in Drosophila buzzatii Journal Article Chromosoma, 118 (3), pp. 349-60, 2009. Links | BibTeX @article{RN33,
title = {Cloning and sequencing of the breakpoint regions of inversion 5g fixed in Drosophila buzzatii},
author = {O Prazeres da Costa and J Gonzalez and A Ruiz},
url = {https://www.ncbi.nlm.nih.gov/pubmed/19198866
http://www.uab.cat/servlet/Satellite?cid=1096481464166&pagename=UABDivulga/Page/TemplatePageDetallArticleInvestigar¶m1=1259046573545},
doi = {10.1007/s00412-008-0201-5},
year = {2009},
date = {2009-01-01},
journal = {Chromosoma},
volume = {118},
number = {3},
pages = {349-60},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2008
|
 | Gonzalez, J; Lenkov, K; Lipatov, M; Macpherson, J M; Petrov, D A High rate of recent transposable element-induced adaptation in Drosophila melanogaster Journal Article PLoS Biol, 6 (10), pp. e251, 2008. Links | BibTeX @article{RN19,
title = {High rate of recent transposable element-induced adaptation in Drosophila melanogaster},
author = {J Gonzalez and K Lenkov and M Lipatov and J M Macpherson and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/18942889
https://f1000.com/prime/1142010#recommendations},
doi = {10.1371/journal.pbio.0060251},
year = {2008},
date = {2008-01-01},
journal = {PLoS Biol},
volume = {6},
number = {10},
pages = {e251},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Macpherson, J M; Gonzalez, J; Witten, D M; Davis, J C; Rosenberg, N A; Hirsh, A E; Petrov, D A Nonadaptive explanations for signatures of partial selective sweeps in Drosophila Journal Article Mol Biol Evol, 25 (6), pp. 1025-42, 2008. Links | BibTeX @article{RN28,
title = {Nonadaptive explanations for signatures of partial selective sweeps in Drosophila},
author = {J M Macpherson and J Gonzalez and D M Witten and J C Davis and N A Rosenberg and A E Hirsh and D A Petrov},
url = {https://www.ncbi.nlm.nih.gov/pubmed/18199829},
doi = {10.1093/molbev/msn007},
year = {2008},
date = {2008-01-01},
journal = {Mol Biol Evol},
volume = {25},
number = {6},
pages = {1025-42},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2007
|
| Gonzalez, J; Casals, F; Ruiz, A Testing chromosomal phylogenies and inversion breakpoint reuse in Drosophila Journal Article Genetics, 175 (1), pp. 167-77, 2007. Links | BibTeX @article{RN16,
title = {Testing chromosomal phylogenies and inversion breakpoint reuse in Drosophila},
author = {J Gonzalez and F Casals and A Ruiz},
url = {https://www.ncbi.nlm.nih.gov/pubmed/17028333},
doi = {10.1534/genetics.106.062612},
year = {2007},
date = {2007-01-01},
journal = {Genetics},
volume = {175},
number = {1},
pages = {167-77},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2006
|
| Casals, F; Gonzalez, J; Ruiz, A Abundance and chromosomal distribution of six Drosophila buzzatii transposons: BuT1, BuT2, BuT3, BuT4, BuT5, and BuT6 Journal Article Chromosoma, 115 (5), pp. 403-12, 2006. Links | BibTeX @article{RN9,
title = {Abundance and chromosomal distribution of six Drosophila buzzatii transposons: BuT1, BuT2, BuT3, BuT4, BuT5, and BuT6},
author = {F Casals and J Gonzalez and A Ruiz},
url = {https://www.ncbi.nlm.nih.gov/pubmed/16773395},
doi = {10.1007/s00412-006-0071-7},
year = {2006},
date = {2006-01-01},
journal = {Chromosoma},
volume = {115},
number = {5},
pages = {403-12},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2005
|
| Gonzalez, J; Nefedov, M; Bosdet, I; Casals, F; Calvete, O; Delprat, A; Shin, H; Chiu, R; Mathewson, C; Wye, N; Hoskins, R A; Schein, J E; de Jong, P; Ruiz, A A BAC-based physical map of the Drosophila buzzatii genome Journal Article Genome Res, 15 (6), pp. 885-92, 2005. Links | BibTeX @article{RN22,
title = {A BAC-based physical map of the Drosophila buzzatii genome},
author = {J Gonzalez and M Nefedov and I Bosdet and F Casals and O Calvete and A Delprat and H Shin and R Chiu and C Mathewson and N Wye and R A Hoskins and J E Schein and P de Jong and A Ruiz},
url = {https://www.ncbi.nlm.nih.gov/pubmed/15930498},
doi = {10.1101/gr.3263105},
year = {2005},
date = {2005-01-01},
journal = {Genome Res},
volume = {15},
number = {6},
pages = {885-92},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
| Casals, F; Caceres, M; Manfrin, M H; Gonzalez, J; Ruiz, A Molecular characterization and chromosomal distribution of Galileo, Kepler and Newton, three foldback transposable elements of the Drosophila buzzatii species complex Journal Article Genetics, 169 (4), pp. 2047-59, 2005. Links | BibTeX @article{RN8,
title = {Molecular characterization and chromosomal distribution of Galileo, Kepler and Newton, three foldback transposable elements of the Drosophila buzzatii species complex},
author = {F Casals and M Caceres and M H Manfrin and J Gonzalez and A Ruiz},
url = {https://www.ncbi.nlm.nih.gov/pubmed/15695364},
doi = {10.1534/genetics.104.035048},
year = {2005},
date = {2005-01-01},
journal = {Genetics},
volume = {169},
number = {4},
pages = {2047-59},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2004
|
| Gonzalez, J; Casals, F; Ruiz, A Duplicative and conservative transpositions of larval serum protein 1 genes in the genus Drosophila Journal Article Genetics, 168 (1), pp. 253-64, 2004. Links | BibTeX @article{RN15,
title = {Duplicative and conservative transpositions of larval serum protein 1 genes in the genus Drosophila},
author = {J Gonzalez and F Casals and A Ruiz},
url = {https://www.ncbi.nlm.nih.gov/pubmed/15454541},
doi = {10.1534/genetics.103.025916},
year = {2004},
date = {2004-01-01},
journal = {Genetics},
volume = {168},
number = {1},
pages = {253-64},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2003
|
| Ranz, J M; Gonzalez, J; Casals, F; Ruiz, A Low occurrence of gene transposition events during the evolution of the genus Drosophila Journal Article Evolution, 57 (6), pp. 1325-1335, 2003. Links | BibTeX @article{RN39,
title = {Low occurrence of gene transposition events during the evolution of the genus Drosophila},
author = {J M Ranz and J Gonzalez and F Casals and A Ruiz},
url = {https://www.ncbi.nlm.nih.gov/pubmed/12894940},
year = {2003},
date = {2003-01-01},
journal = {Evolution},
volume = {57},
number = {6},
pages = {1325-1335},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
2002
|
| González, J; Ranz, J M; Ruiz, A Chromosomal Elements Evolve at Different Rates in the Drosophila Genome Journal Article Genetics Society of America, 161 (3), 2002. Links | BibTeX @article{RN23,
title = {Chromosomal Elements Evolve at Different Rates in the Drosophila Genome},
author = {J González and J M Ranz and A Ruiz},
url = {https://www.ncbi.nlm.nih.gov/pubmed/12136017},
year = {2002},
date = {2002-01-01},
journal = {Genetics Society of America},
volume = {161},
number = {3},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
|
